Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g1054 | ATGAAAATGGGAGTTTTTAGCCTCGATCGTCTTTCATCATCGCTGTTTGCAGTTTCTCCACTTCAGAATCATGCGCACAATAAATCTTTACCATTTTGTTCAAAGCTTTCAAACCCCCACTTCCGATTGAACAAGATTTGGTGCGGAATGCCTGAGAGTGGAATTCGGCAAAACCCCACAAGCGGCAGAGCTTCCACTTCCAGGAACAGGATGGAGGAATACAATTTGGCTATGAAGAAGATGATGAGAAACCCCTATGAGTATCATCATGAACTGGGTATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCCGAAGATATTGATTTCTTGAAGGAGGAAGAAGGCGTTGCCTATATTCTAAATTTACAGCAGGACAAGGATGTCGAGTATTGGGGAATCAACTTACAATCCATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCTAAAGATTTTGATCCAGATTCCTTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGCTAGAATGGGCGATTTCAGAGGGCAAAGGAAAAGTTTATGTGCATTGCACCGCCGGACTGGGAAGGGCCCCTGCCTTAAATACAGCATATGAAGCCCTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGCCTCCCAGATAACGCATTCGAGGGTATTGCAGATTGGGAAAGAAACTTGATTCAGGATCGGATCCGTTCTCTTCGTGGAACTTAG | 819 | 43.35 | MKMGVFSLDRLSSSLFAVSPLQNHAHNKSLPFCSKLSNPHFRLNKIWCGMPESGIRQNPTSGRASTSRNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGINLQSIIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPALNTAYEALTSKRPCGPSKKAIRGATYDLSKNDPWKEPFESLPDNAFEGIADWERNLIQDRIRSLRGT | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 11206027 | 11208862 | - | Maker00028540 | Lcy7g1054 | 637886 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g1054 | 272 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 87 | 211 | IPR029021 | - | |
| Lcy7g1054 | 272 | Pfam | Dual specificity phosphatase, catalytic domain | 119 | 210 | IPR000340 | GO:0016311(InterPro) | |
| Lcy7g1054 | 272 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 172 | 210 | IPR000387 | GO:0016311(InterPro) | |
| Lcy7g1054 | 272 | FunFam | Phosphoglucan phosphatase LSF2, chloroplastic | 78 | 272 | - | - | |
| Lcy7g1054 | 272 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 58 | 241 | IPR052832 | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER) | |
| Lcy7g1054 | 272 | CDD | DSP_laforin-like | 94 | 228 | IPR045204 | GO:0019203(InterPro) | |
| Lcy7g1054 | 272 | Gene3D | Protein tyrosine phosphatase superfamily | 78 | 272 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy7g0607 | Lcy-Chr7:5487779 | Lcy7g1054 | Lcy-Chr7:11206027 | 6.60E-23 | dispersed |
Pathway information