Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1059 ATGATTATTTGTGACGGTGTATGTAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTATTCCTCCACAGCAAGTTATGGGGAGGCGACACACGCTGCAGGGTCCTCCTGGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTGAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCTTACTTCTCCCCCCATGAGCCCCACAAGTTCGCCTCCGTCCACAAGGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCATGGAAGTTCCCGAGAATCAGAGAGCCGATGCTGCGAACAGCCTAGTTTATGAAGCTAATGTGAGGCTGAGAGATCCTGTCTATGGCTGCATGGGAGCCATTTCAGCTCTACAACACCAAATCCAAGCTTTACAAGCTGAGCTCAATGCAGTTAGAGCTGAGATATTGAGATACAAATATAGAGAAGCTAATATGATTCACTCTTCTCCTCAGCAACATGTGCCTTTTCTTTCTTCTTCAGCCGAGGTCGTTTCGGTCGCCGTACCGCCGCCACCACCACCTCCGCCGCTACCTCCACCGTCACATCAGGATGCTTCTTCCTCTTCCTCGTCGTTGTACAACCGGCCCGCGGCAGCTGCTGATTTTAGTACCATTTCAAGTGATGAAAATGTTACCTATTTTGTTAGTACTTCTACTGCTCATCAATTGAATTCTTAG 735 48.44 MIICDGVCRERFDEIAKKIKRETDVSSNIIPPQQVMGRRHTLQGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRYKYREANMIHSSPQQHVPFLSSSAEVVSVAVPPPPPPPPLPPPSHQDASSSSSSLYNRPAAAADFSTISSDENVTYFVSTSTAHQLNS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11260556 11261671 + Maker00028452 Lcy7g1059 637891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1059 244 ProSiteProfiles LOB domain profile. 53 154 IPR004883 -
Lcy7g1059 244 Coils Coil 133 160 - -
Lcy7g1059 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 52 185 - -
Lcy7g1059 244 MobiDBLite consensus disorder prediction 185 201 - -
Lcy7g1059 244 MobiDBLite consensus disorder prediction 184 213 - -
Lcy7g1059 244 Pfam Lateral organ boundaries (LOB) domain 54 151 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1059 Lcy-Chr7:11260556 Lcy8g1638 Lcy-Chr8:42979317 3.69E-48 dispersed
Lcy10g2164 Lcy-Chr10:45606970 Lcy7g1059 Lcy-Chr7:11260556 2.05E-75 wgd
Lcy11g0363 Lcy-Chr11:6064387 Lcy7g1059 Lcy-Chr7:11260556 5.74E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20434 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1059 - - - 0.0