Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1071 ATGGCTTCTTCTTCACCATTTCCCTCTCTTCTTCTTCCTTTCTTCTTCCTCTCTTTTCGCTCCGTCTTTGCCGACTATGGTGGCTGGCAGAGCGGCCATGCCACATTCTATGGCGGTGGCGACGCATCTGGTACCATGGGCGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGGACGAACACGGTGGCGCTGAGCACGGCGCTGTTCAACAACGGCCTCAGCTGCGGCGCTTGCTACGAAATGACCTGCACCAACGACCCCAAATGGTGCCTGCCCGGAACCATCACCGTCACGGCCACCAACTTCTGCCCCCCCAACTTCGCCCTCCCCAACAACAACGGCGGCTGGTGCAACCCTCCCCTCCAGCACTTCGACATGGCCGAGCCCGCCTTCCTCCAGATCGCTCAGTACCGTGCCGGAATCGTCCCCGTCTCCTTTCGGAGAGTGTCATGTGTGAAGAAAGGTGGAGTGAGGTTCACAATCAACGGCCACTCGTACTTCAACCTTGTCCTAATCACGAACGTGGGCGGCGCCGGTGATGTCCATGCCGTGTCGATAAAGGGCTCTCGAACCGGATGGCAAGCCATGTCCCGAAATTGGGGCCAAAATTGGCAGAGCAACAACTATCTCAACGGCCAAGGCCTCTCTTTTCAAGTCACTCTCAGCGATGGTCGTACTCTCACTGCCTACAATCTCGTCCCTTCCAATTGGCAGTTTGGCCAAACCTTTGAAGGCCCCCGATTCTAA 756 57.01 MASSSPFPSLLLPFFFLSFRSVFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTITVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVSCVKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGQTFEGPRF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11465885 11470278 - Maker00028836 Lcy7g1071 637903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1071 251 CDD DPBB_EXPA_N 28 154 - -
Lcy7g1071 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Lcy7g1071 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Lcy7g1071 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Lcy7g1071 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Lcy7g1071 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Lcy7g1071 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Lcy7g1071 251 FunFam Expansin 159 251 - -
Lcy7g1071 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Lcy7g1071 251 Gene3D - 18 154 IPR036908 -
Lcy7g1071 251 FunFam Expansin 18 155 - -
Lcy7g1071 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Lcy7g1071 251 SMART dpbb_1 64 149 IPR007112 -
Lcy7g1071 251 PANTHER EXPANSIN-A15 15 249 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Lcy7g1071 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Lcy7g1071 251 SUPERFAMILY Barwin-like endoglucanases 14 177 IPR036908 -
Lcy7g1071 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Lcy7g1071 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Lcy7g1071 251 Gene3D - 159 249 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1894 Lcy-Chr13:37887633 Lcy7g1071 Lcy-Chr7:11465885 5.68E-119 dispersed
Lcy4g0428 Lcy-Chr4:5273355 Lcy7g1071 Lcy-Chr7:11465885 2.88E-91 dispersed
Lcy5g2536 Lcy-Chr5:48146177 Lcy7g1071 Lcy-Chr7:11465885 3.05E-119 dispersed
Lcy6g1198 Lcy-Chr6:14070755 Lcy7g1071 Lcy-Chr7:11465885 9.33E-90 dispersed
Lcy7g0294 Lcy-Chr7:2530779 Lcy7g1071 Lcy-Chr7:11465885 1.99E-142 dispersed
Lcy7g0893 Lcy-Chr7:8939840 Lcy7g1071 Lcy-Chr7:11465885 2.06E-125 dispersed
Lcy7g1071 Lcy-Chr7:11465885 Lcy8g1801 Lcy-Chr8:44424220 3.50E-127 dispersed
Lcy10g2154 Lcy-Chr10:45546815 Lcy7g1071 Lcy-Chr7:11465885 2.72E-158 wgd
Lcy3g0450 Lcy-Chr3:15686323 Lcy7g1071 Lcy-Chr7:11465885 2.59E-85 wgd
Lcy6g2003 Lcy-Chr6:42665910 Lcy7g1071 Lcy-Chr7:11465885 1.68E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1071 - - - 0.0