Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1073 ATGGAAATCCCCAATCCCTCCAATCAAATGGCTTCCTCTTCCAACCCCTCCGCCCCTTTTCGCCCTTCCTTCCACCGCCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGGACGATCTCGATCTCGTTTCCGACCCCTTCGATGGACCCTCTTCCGGATTTGGAGATCTGGGCTTCGAGGATGATCTCTTGTGCACCTTCATGGACATCGAGAAGATCGGATCCAAAATCGACAGTGGGTCGTCGTCGAAATCTGAAGCGGCTGCCGGTGGCGGTGCTGCGGCGGAGAATGTCGATGGGGAGAAAGTTGTTTCCCGCCCGAGGCACCGCCATAGCAATTCTGCTGATGGGTCCTCCATTATGGAGTCCATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGCTGTGGACTATTGATCCTAAGCGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAGAGCCTTCAGACTGAAGCGACAACTCTTTCTGCACAGCTCACGTTGTACCAGAGAGATACCACAGGGCTTTCAACCGAAAACACAGAGCTCAAACTTCGCTTACAAGCTATGGAACAGCAAGCTCATTTACGCGACGCTCTTAATGAAGCATTGAAAAAGGAAGTCGAGCGGCTCAAGATTGCGACCGGAGAAGTAATGACAGCTACAGATTCGTATAACTTTGGAATGCCTCAAGTTTCATACCCCCAGTCTTGCTTTTCACACCAACCACAACCCGGGCGACACAATCCGCAGAGGACGCAAAGGCCCCAAGTTCATCCATACCATCATTCTAGTCTACCGAACCCGCATCAGGCTCTATTTGTTGCATCCCACCAGCCACATGCCTTAACAGAAATGTTTCAGCAGGATCCTATTAGCCGATTGCAGGGTCTCGATATCGGTAGCAGAGGCGCAGAAATAAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA 1038 50.67 MEIPNPSNQMASSSNPSAPFRPSFHRRAHSEVHFRIPDDLDLVSDPFDGPSSGFGDLGFEDDLLCTFMDIEKIGSKIDSGSSSKSEAAAGGGAAAENVDGEKVVSRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMPQVSYPQSCFSHQPQPGRHNPQRTQRPQVHPYHHSSLPNPHQALFVASHQPHALTEMFQQDPISRLQGLDIGSRGAEIKPEGSSISVSESSSTF 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11487583 11493344 - Maker00028603 Lcy7g1073 637905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1073 345 Pfam bZIP transcription factor 144 199 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g1073 345 MobiDBLite consensus disorder prediction 258 290 - -
Lcy7g1073 345 Coils Coil 219 239 - -
Lcy7g1073 345 MobiDBLite consensus disorder prediction 258 283 - -
Lcy7g1073 345 MobiDBLite consensus disorder prediction 76 120 - -
Lcy7g1073 345 CDD bZIP_plant_RF2 145 194 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g1073 345 SMART brlzneu 140 204 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g1073 345 MobiDBLite consensus disorder prediction 1 24 - -
Lcy7g1073 345 Coils Coil 160 187 - -
Lcy7g1073 345 Gene3D - 144 194 - -
Lcy7g1073 345 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 300 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy7g1073 345 MobiDBLite consensus disorder prediction 325 345 - -
Lcy7g1073 345 MobiDBLite consensus disorder prediction 1 20 - -
Lcy7g1073 345 FunFam probable transcription factor PosF21 143 196 - -
Lcy7g1073 345 MobiDBLite consensus disorder prediction 101 115 - -
Lcy7g1073 345 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 205 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g1073 345 SUPERFAMILY Leucine zipper domain 144 195 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1347 Lcy-Chr10:36623456 Lcy7g1073 Lcy-Chr7:11487583 4.20E-50 dispersed
Lcy11g1261 Lcy-Chr11:35823558 Lcy7g1073 Lcy-Chr7:11487583 1.01E-45 dispersed
Lcy7g1073 Lcy-Chr7:11487583 Lcy9g0965 Lcy-Chr9:32325539 3.28E-51 dispersed
Lcy9g1335 Lcy-Chr9:38118924 Lcy7g1073 Lcy-Chr7:11487583 1.58E-10 transposed
Lcy7g1073 Lcy-Chr7:11487583 Lcy8g1689 Lcy-Chr8:43466071 7.40E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20435 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1073 - - - 0.0