Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1081 ATGTCTTCCCAGAAATCTTGTTACACGTGTTCTCAGTCAGTTTCTGAAGACTCAATTGCTCAAAATTTATCTCTTCAAGCTGCAGTCGAAGCTTTCCGTCGGGAAGAAGAATTGTTATTTTACCGCTCACCAAAGAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTCAACTCTCATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCACAGCGGTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAATACCGCTCGCTTGCGAAGGTTCCGAATGATGCAGCATCAAAAACGATAACAAGGAAGATCGCACCGCATTGGCTTTAG 450 45.56 MSSQKSCYTCSQSVSEDSIAQNLSLQAAVEAFRREEELLFYRSPKRRRERFEQDKGGYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTITRKIAPHWL 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11557481 11561968 - Maker00028497 Lcy7g1081 637913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1081 149 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1081 Lcy-Chr7:11557481 Lcy7g1349 Lcy-Chr7:19846695 3.91E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g2245 . 2 723 Plant U-box Gene Family AT5G57035 55.4 3.5e-228 788.9
Lcy7g1081 . 1 150 Plant U-box Gene Family AT5G05230 61.3 7.6e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40