Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1082 ATGCGAGCATTGTTGAAGATGAAACGGCTGATTGAGCTCTTCTTCTTGTTCGTTTTGGCTCCACTCTGTGTGAGATGTGCAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGCCGTTCAAGATCCGAAGCAGAACCTCGCCACCTGGGACGAAGATGACGATAGTCCCTGCAACTGGAAGGGTGTTGAATGCAGTCCCAGATCCAACCGGGTCGTCGAGCTCACCCTCGATGGGTTCTCTCTCTCGGGTCGGCTCGGCCGGGGGCTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCTCGAAGAACAATCTTAGTGGAAATATAAGCCCCAATTTCGCTCGAGTCAATAATCTTCAGGTGATTGATTTGAGCGGGAATAATTTCTCCGGGTCTGTTTCGGATGATTTTTTTCGTCAATGTAGGTCTTTGAGAGTTGTTTCTTTGGCCAACAACAAATTTTCTGGGAAAATTCCTGATAGTTTGAGCTTGTGTGGGAGTCTTATTGCAGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCTTCTGGGATTTGGTCTCTCAGTGGGCTTCGATCATTGGACTTGTCTGATAATGCTTTGGTGGGTGAAATTCCGAAGGTAATTGAGAATTTGTATAATCTTCGGACTCTTAACTTGAGGAAGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAATCTTCCTCAGGCCATGCAGAAACTTGTTTTGTTTAGTAATCTGATTTTAAGCAGGAATTTGTTCGAAGGAAATTTTCCAGAGTGGATAGGAGAAATGAAAGGCCTTGAAACTCTGGACTTTTCTAAGAATAATTTTACTGGCCATATTCCAACTACGATAGAGAATCTTCAATATCTGAAAGTACTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAGTCTGTGATGAAATGCCAAAGCCTTTTGGCGATAGATTTCAGTCACAATTCAATTGCTGGAAATCTTCCAGCGATCAGAAATTTAGAAAAGCTGCAGTTTCTGAGCCTGTCGGGGAATTCTTTTGTTGGTCCAATTCCAGAAACTATAGGAGATCTGAAAGCTTTGAGCATTCTTGATTTGAGTAGGAATCAGCTGAATGAAAGTATTCCTGAGGCAATTGGAGGAGCTGTGTCCCTAATGGAGCTGAAACTGGAAGAAAATTTTCTGGGGGGTGAAATTCCCTCTTCAATTGGTCATTGTTCTTCCCTTACAACTTTGTTCATATCACACAATAACTTAACTGGCCCGATACCAGCGGCATTAGCTAAACTCTCTCATCTCCAAAATGTCGACTTATCATTTAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTATGTTCAATATTTCTCACAACGACCTCAAGGGTGAGCTGCCTGCTGGTGTATTCTTTAACACCATCTCCCCTTCATCTGTTGCTGGCAATCCGTCCCTCTGTGGCTCTGTCGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAACCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTATTAATTATAGAAGAAATCGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGCGCTGCTGCTTTCATCATCATTGGCGTAATATTGATCACCATCCTCAACATTCGTGTTCAATCGCCCACATCTTCTTCATCTGCAGCTGCACTTGCATTATCTGTTGGGGATGATTTCAGTCATTCCTCCAGTCCCGATGCGAATTCTGGAAAGCTTGTGGTGTTGTCAGGAGAGCTAGACTTTAGCACAGGAGCACATGCCCTGCTGAATAAGGATTGTGAACTTGGGCGAGGTGGATTTGGAGCAGTTTACCATACTGTTCTGCGGGACGGACACTCAGTTGCAATCAAGAAGCTTACCGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTTGAGAGGGAAGTTAGGAAGTTTGGGAATGTCAGGCACCAAAATCTCGTGGCACTTGAAGGTTATTATTGGACTCCCTCGCTACAGCTCCTTATATACGAATTTGTCTCTGGGGGTAGCTTGTATGGGCTGCTCCACGAAGCATCGGATGACAATGTCCTGTCGTGGAATGAGAGGTTCGACATAATTCTCGGCACAGCAAAAGGACTGGCTCATTTGCATCAATCAAACACAATCCACTACAACATAAAATCCAGCAATATTCTTATTGATTGCAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCAAGATTGCTGCCGATGTTAGATCGTTATGTTTTAAGTAGCAAGATCCAGAGTGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTGAAGATAACCGAAAAATGTGACGTGTACGGCTTTGGGATCTTGATTCTAGAGGTAGTTACAGGGAAGAGACCTGTCGAGTACATGGAAGACGACGTTGCAGTTCTCTGTGACATGGTCAGAGGTGCAGTGGAAGAAGGAAGGGCCGAAGAATGCATCGACAGGAAGCTGAGGGGGAATTTCCCAGCCGAAGAGGCCATTCCTGTATTAAAATTAGGTTTGATCTGCACCTCCCATGTGCCATCAAATCGGCCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCATCAGAATTACAAGAGGAGTTAGGATAA 2778 44.2 MRALLKMKRLIELFFLFVLAPLCVRCANLSLNDDVLGLIVFKAAVQDPKQNLATWDEDDDSPCNWKGVECSPRSNRVVELTLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNISPNFARVNNLQVIDLSGNNFSGSVSDDFFRQCRSLRVVSLANNKFSGKIPDSLSLCGSLIAVNLSSNQFSGPLPSGIWSLSGLRSLDLSDNALVGEIPKVIENLYNLRTLNLRKNRFSGQIPDGIGSCLLLRSIDLSENSFSGNLPQAMQKLVLFSNLILSRNLFEGNFPEWIGEMKGLETLDFSKNNFTGHIPTTIENLQYLKVLNLSSNGFTDSFPESVMKCQSLLAIDFSHNSIAGNLPAIRNLEKLQFLSLSGNSFVGPIPETIGDLKALSILDLSRNQLNESIPEAIGGAVSLMELKLEENFLGGEIPSSIGHCSSLTTLFISHNNLTGPIPAALAKLSHLQNVDLSFNNLNGTLPKQLSNLPNLLMFNISHNDLKGELPAGVFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSINYRRNRNILSISALVAIGAAAFIIIGVILITILNIRVQSPTSSSSAAALALSVGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGNVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYGLLHEASDDNVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVRGAVEEGRAEECIDRKLRGNFPAEEAIPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11576919 11580971 - Maker00028780 Lcy7g1082 637914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1082 925 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine Rich Repeat 294 315 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine Rich Repeat 389 409 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Lcy7g1082 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 636 718 - -
Lcy7g1082 925 Gene3D Ribonuclease Inhibitor 35 143 IPR032675 -
Lcy7g1082 925 Gene3D Ribonuclease Inhibitor 248 531 IPR032675 -
Lcy7g1082 925 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 358 531 - -
Lcy7g1082 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 719 920 - -
Lcy7g1082 925 SUPERFAMILY L domain-like 197 555 - -
Lcy7g1082 925 SMART LRR_sd22_2 458 484 - -
Lcy7g1082 925 SMART LRR_sd22_2 291 317 - -
Lcy7g1082 925 SMART LRR_sd22_2 386 405 - -
Lcy7g1082 925 SMART LRR_sd22_2 339 364 - -
Lcy7g1082 925 SMART LRR_sd22_2 195 221 - -
Lcy7g1082 925 Gene3D Ribonuclease Inhibitor 144 247 IPR032675 -
Lcy7g1082 925 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515(InterPro)
Lcy7g1082 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524(InterPro)
Lcy7g1082 925 PANTHER OS05G0588300 PROTEIN 290 382 IPR050994 -
Lcy7g1082 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1082 925 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Lcy7g1082 925 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Lcy7g1082 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Lcy7g1082 925 SUPERFAMILY L domain-like 32 282 - -
Lcy7g1082 925 CDD STKc_IRAK 648 912 - -
Lcy7g1082 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g1082 925 SMART LRR_typ_2 291 315 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 98 121 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 458 481 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 219 243 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 386 410 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 122 146 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 482 506 IPR003591 -
Lcy7g1082 925 SMART LRR_typ_2 195 218 IPR003591 -
Lcy7g1082 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0033 Lcy-Chr5:497499 Lcy7g1082 Lcy-Chr7:11576919 2.68E-175 dispersed
Lcy7g1082 Lcy-Chr7:11576919 Lcy10g0192 Lcy-Chr10:2743993 8.32E-52 dispersed
Lcy7g1396 Lcy-Chr7:21998007 Lcy7g1082 Lcy-Chr7:11576919 2.19E-30 dispersed
Lcy10g2150 Lcy-Chr10:45502300 Lcy7g1082 Lcy-Chr7:11576919 2.89E-223 wgd
Lcy6g2022 Lcy-Chr6:43123297 Lcy7g1082 Lcy-Chr7:11576919 4.66E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66084 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1082 - - - 0.0