Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1098 ATGGAGACCTCGGCTTCCAATTCTGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGCAGCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTCATTTTGGATTACTCGGGAATTCTCCCCACTAGGGCTGTTCGTCATGAATCTGAGCCTGTAATCAACGGCTCTGCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATGATCACTTCTTCCTCTTCCTTGTCTTCGTCTTCTTCTTCTCCTGCCACCACCTCTTCCTCCGGTAATTCCAGCCCCACTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCTAGTGGGTTGTTGCCAAATCAGGCTCTGGTTGGACAAGCTGGTTACGAGCAAAATGGCGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACCCCTTCTTCATCTATTCAATCTGGAAGCAGTCGAGTCGATGGAGAATCTGGAAATGGCGTGGAAGAGAATGTTAATAGAGATTCGTCTTATCAGAGATACGATATTCAGCAGGTTGCCAGATGGATTGAACAAATTCTTCCATTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCATTTAGAAGGGTTTCTTCACATGTTTTCATGTATTGGAAAATCAAATATGATTTGGAAGGAAACTCAGGGGAGTGGGGAAGGTGTTAAGAAAGAAGCTGAGGAACACTGTGGCAACAGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTACAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTCCTTGCTGGTACTTCTATTGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCACAGTGATGATCTTCTGTACCCGTTAATCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAATGATACAATGGTGAGGCAGGTTGTAATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGTAGAGGTCATAATTTTCGCCGACAGGGTCAGATTTTAACTCTTGTGGAATACACTCTTCTGTTATACCGTGCATTATTACCCACACCTGTATGGTACCGGTTCTTCTTAAACAAAGATCAAGGGAGCCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGCAAGTACTTTTATTCTGACTTATCTCATGTATTTGGGAGCTTATTTACTAGTGTGCGAAGGTGTATTCTTAGCAGTGCTAGGAAGATCTATGCATGTAAATGCTGCGGGAGACCTTTGTGCTATTTGTCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTGGTAAAGCCCGCAGAACTTCGAACATTTGGCGATGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG 1677 43.17 METSASNSDPYSNSSSPTTARSSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINGSATPDLRVYSQNQNHLMITSSSSLSSSSSSPATTSSSGNSSPTGEVSIRIIGSGEQDPSPSGLLPNQALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTPSSSIQSGSSRVDGESGNGVEENVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFLHMFSCIGKSNMIWKETQGSGEGVKKEAEEHCGNSFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLIMLPPKTVPPFWHALFIILVNDTMVRQVVMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQASTFILTYLMYLGAYLLVCEGVFLAVLGRSMHVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11831183 11839747 + Maker00028628 Lcy7g1098 637930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1098 558 MobiDBLite consensus disorder prediction 140 191 - -
Lcy7g1098 558 ProSiteProfiles Zinc finger RING-type profile. 497 535 IPR001841 -
Lcy7g1098 558 SMART ring_2 497 534 IPR001841 -
Lcy7g1098 558 ProSitePatterns Zinc finger RING-type signature. 512 521 IPR017907 -
Lcy7g1098 558 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 15 460 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Lcy7g1098 558 MobiDBLite consensus disorder prediction 84 111 - -
Lcy7g1098 558 Pfam Ring finger domain 496 535 IPR001841 -
Lcy7g1098 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 554 IPR013083 -
Lcy7g1098 558 CDD RING-HC_RNFT1-like 495 535 - -
Lcy7g1098 558 MobiDBLite consensus disorder prediction 1 25 - -
Lcy7g1098 558 MobiDBLite consensus disorder prediction 162 191 - -
Lcy7g1098 558 SUPERFAMILY RING/U-box 495 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1098 Lcy-Chr7:11831183 Lcy1g1641 Lcy-Chr1:16811883 8.15E-176 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1098 - - - 0.0