Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g1103 | TTTTTTCTTTTTATTGCGATGGGTGGGGCTGTAATTGCTGGTTTGGTGTCGGTTTTTCCGGCGGCGGTTGTGCTGGCGGTGCTGGTGGTGTTGGTCCATTTGTACTATGGGGTGTGGAGGAGCACGGCGGAGGTGAGGAGGAAGCTGCGAGCGCAGGGGGTGACGGGGCCGCCGCCGTCCGCTCTGTACGGAAACTTGCCGGAGATGAAGGAGATCGAGTTGCAGGCGGCGGCCATGGCTTCTCCGCCGCACCATGCGTCGGCGATTGTCGCTCATGATTATACCTCCACTCTCTTCCCTTATTTCGTCAAGTGGAGGAAGCAATACGGTACTTTTCTGCCTTCTAATGGGCCATGGATGAGTAGATGGAAGGCCCATAAATTGAAGTTTGAGATGTTGGCAGGCCCATTATACACGTACTCGACAGGGAGGAGGCAGCATCTGTACGCCAACAATGTGGATGTGGTGAAGGACCTAAGCCTCTCCACCAATCTCCACTTGGGCAAGCCCTTCTACGTCACCAAGAAGCTCGCCCCCGTCCTCGGCCACAGCGTCATCAGATCCAACGGCGCCGTCTGGGCGCTGCAGCGCAAGATCATCGCCCCGGAGTTCTTCATCCACCGGGTCCGCGCCATGGCCGCGCTCATGCTCGACGCCGCCGCGCCCCTGCTGGAGAAATGGGAGGGGGCGATCGGAGAAGGAGACGGAGCGGCGGCGGCGATTGAGGTGGACGAGGATCTGAGAGCATTCTCGGCGGATGTGATTTCCAGGGCTTGCTTTGGGAGCTCCTATGAGAAGGGGAAGCACATCTTTTCAAAGCTTAGGGATCTTCAGAAGTTGGTTACCCAAGGGAACTTTCTCTTTGGATATTCTTTCAGTGAGATATTTTTTCAAGGAAGCAAACAGAAAAGAATAAAGAAGCTGGAGAAGGAGATCGAGTCATTAATATGGGAGACGGCTCAACAGCGGCAAGAAGAATGCTCGAAAACTTCGTTGTTGGAGAAGGATCTGTTGCAGCTGATAATGGAGGCTGCCATGAATGATCCAAATGTAGGAGCTTGCAATGACTCCTCCAAAAAGTTCATCGTCGACAATTGCAAGAGCATCTACTTCGCCGGCCATGAGTCCACTGCGGCTGCAGCCACCTGGTCCTTCATGCTCCTCGCCCTCCACCCTCAATGGCAAGATCGTATCCGCTCTGAGTTTGCTCAAGCTTGCCCCGACGGCCGCCCCGACACGACCCTCATCTCTCAACTTAAATCGGTGAGTATGGTGGTTCACGAAACGTTGCGACTATACCCACCAGCGGCATTTGTCGCGAGGGAGACATTTGCCGAGACACGACTGGGGAACGTGGTGGTTCCAAAGGGTGTCTGCTTATGGACTTTGATTCCGATGTTGCATAGAGAAGTTGAAATATGGGGAGAAGATGCAAATGAGTTCAAGCCAGAGCGATTCGCCAATGGCATAGCCAAGGCCTGCAAGTTCCCTCAGGCCTATGTGCCATTCGGGGCAGGTCCTCGACTATGCTTAGGGAAGAACTTTGCATTGGTTGAGTTGAAAATCATCATTACTCTTGTAGTTTCCAAGTTTAGATTCTCATTGTCTCCTGAGTATCGCCATTCTCCTTCTTATAGAATGATTGTGGAGCCTGCTAATGGTGTGAAGATTGTCTTCCAAAGGCTTTGA | 1689 | 52.99 | FFLFIAMGGAVIAGLVSVFPAAVVLAVLVVLVHLYYGVWRSTAEVRRKLRAQGVTGPPPSALYGNLPEMKEIELQAAAMASPPHHASAIVAHDYTSTLFPYFVKWRKQYGTFLPSNGPWMSRWKAHKLKFEMLAGPLYTYSTGRRQHLYANNVDVVKDLSLSTNLHLGKPFYVTKKLAPVLGHSVIRSNGAVWALQRKIIAPEFFIHRVRAMAALMLDAAAPLLEKWEGAIGEGDGAAAAIEVDEDLRAFSADVISRACFGSSYEKGKHIFSKLRDLQKLVTQGNFLFGYSFSEIFFQGSKQKRIKKLEKEIESLIWETAQQRQEECSKTSLLEKDLLQLIMEAAMNDPNVGACNDSSKKFIVDNCKSIYFAGHESTAAAATWSFMLLALHPQWQDRIRSEFAQACPDGRPDTTLISQLKSVSMVVHETLRLYPPAAFVARETFAETRLGNVVVPKGVCLWTLIPMLHREVEIWGEDANEFKPERFANGIAKACKFPQAYVPFGAGPRLCLGKNFALVELKIIITLVVSKFRFSLSPEYRHSPSYRMIVEPANGVKIVFQRL | 562 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 11965621 | 11971195 | - | Maker00028432 | Lcy7g1103 | 637935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g1103 | 562 | PRINTS | E-class P450 group I signature | 510 | 533 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | E-class P450 group I signature | 381 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | E-class P450 group I signature | 250 | 268 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | E-class P450 group I signature | 423 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | E-class P450 group I signature | 500 | 510 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | E-class P450 group I signature | 361 | 378 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | Gene3D | Cytochrome P450 | 38 | 562 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | SUPERFAMILY | Cytochrome P450 | 133 | 560 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | Pfam | Cytochrome P450 | 129 | 555 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | P450 superfamily signature | 501 | 510 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | P450 superfamily signature | 424 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | P450 superfamily signature | 510 | 521 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | PRINTS | P450 superfamily signature | 372 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy7g1103 | 562 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 503 | 512 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy7g1103 | 562 | Coils | Coil | 305 | 325 | - | - | |
| Lcy7g1103 | 562 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 30 | 554 | IPR050665 | GO:0004497(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g1646 | Lcy-Chr1:16906465 | Lcy7g1103 | Lcy-Chr7:11965621 | 2.09E-144 | dispersed | |
| Lcy5g1143 | Lcy-Chr5:24565175 | Lcy7g1103 | Lcy-Chr7:11965621 | 1.81E-27 | dispersed | |
| Lcy7g1103 | Lcy-Chr7:11965621 | Lcy9g0284 | Lcy-Chr9:7371433 | 1.95E-85 | dispersed | |
| Lcy7g1100 | Lcy-Chr7:11903376 | Lcy7g1103 | Lcy-Chr7:11965621 | 1.34e-313 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy7g1103 | K20661 | - | csv:101216582 | 814.298 |