Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1119 ATGGTTTCCAGGTCGTACTCCAATTTACTCGAACTCGCCACCGGAGAATCGCCCTCCTTCGGCCGTATCAACCGCCAAATCCCGCGGATTATGACCGTCGCCGGCTTAATCTCCGACATCGACGACGACCCAACGGAGAGCGTCTCCTCGGAGCCCTCGTCCTCCTCCGCCCCTCGCGACCGGATTATCATTGTCGCCAATGAGCTCCCCATCAGAGCCCACCGGAAATCCGGCGGTGGCGCCGCCGCTTGGACTTTCAGTTGGGATGAAAATTCCCTTCTCCTTCAGCTGAAAGATGGGCTGGGAGATGATGATTTTGAGGTGTTCTATGTGGGTTGTCTCAAGGAAGATATTCACCCAAATGAGCAAGATGAAGTCTCTCAAATACTTTTGGAGACTTTTAAATGTGTCCCAACATTTCTCACTCAAGATCTTTACACTAGGTACTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTGTCGCCCGACCTCGGCGGTCGGTTTAATCGGCCGCTGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATCATGGAGGTGATCAATCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTTTGAGGAAGAGATTCAATAGGGTTAAGCTTGGATTCTTTTTGCATAGTCCATTCCCGTCGTCCGAGATATATCGGACGCTCCCGATCCGGGAGGAGCTCTTGCGAGCGCTCCTGAATTCGGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTATCTTGTTGTAGTCGAATGCTCGGTCTAACGTATGAGTCGAAACGGGGGTATATCGGGATAGAGTATTACGGTCGAACAATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAGCTTCAATCTGTTTTGAGCCTTCAGAGGACTGAGGAGAAGGTTAGTGAGCTTATCAAGCAGTTTCGCGACCGGGATAGGATAATGTTGCTCGGTGTCGATGATATGGATATATTTAAGGGGATAAGTTTGAAGCTTTTGGCTATGGAGCAGTTGTTGATCACACACCCTGAGTGGCAGGGGAAAGTTGTATTGGTGCAGATTGCCAATCCAGCAAGAGGCCGAGGGAAAGATGTGAAAGAAGTCCAGGACGAGACGAAGGCGACTGTTAAGCGGATTAACGATATGTTTGGTCAACCTGGGTACGAGCCAGTTGTGTTGATTGAGGAGCCACTCAAGTTCTATGAGAGAATTGCATATTATACTGTTGCCGAATGTTGTTTGGTCACCGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACGTTGTGAGTCGCCAAGGGAATGATAAGTTGGATAAACTCTTGGGGTGGGAATCATCAGCTCCAAAGAAGAGTATGTTGGTTATATCCGAGTTCATCGGGTGCTCTCCGTCCTTAAGCGGAGCAATTCGAGTTAATCCCTGGAATATTGATGCTGTAGCTGATGCAATGGAATGTGCATTGGAGATGGAAGATGCAGAGAAGCAGCTCCGCCATGAGAAGCATTTTAGATACGTGAGCACACACGATGTCGGGTATTGGGCTCGGAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGATCATGTGAGGCAGAGATGTTGGGGTATCGGGTTCGGTTTAAGCTTCCGAGTCGTGGCTCTTGATCCGAACTTCAGGAAGCTCGCGATGGAACACATAATTTCGACTTATAAGAGGACGAAATCTCGGGCTATTCTTTTGGACTATGATGGTACATTAATGCCTCAAGCTTCCATTGATAAGAGTCCTACTTCTAAATGCCTTGAAACTCTTAATACCTTGTGTCGAGATAAGAACAATATGGTATTCGTTGTGAGTGCGAAAAGTCGAAAGACGCTTGCTGAATGGTTTGCCTCTTGTGAGAATCTCGGCATTGCGGCCGAGCACGGATACTTTATCAGGCTAAAGCAAGATGAGGAATGGGAAGCCAGTTTACCAGTTGCAGATTGCTGTTGGAAGCAAATTGTGCAGCCAGTGATGAAACTCTACACTGAAACGACTGATGGATCGACCATCGAAGATCGAGAAACTGCGCTTGGATGGAGTTATGAAGATGCAGATCCGGATTTCGGTTCTTGTCAAGCTAAGGAGCTCTTCGATCATCTCGAAAGCGTCCTAGCTAACGAACCAGTTACTGTCAAAAGTGGACAGAACATTGTGGAAGTTAAACCACAGGGCGTCAGCAAGGGTCTCGTAGCCAAACGACTGCTCTCCGCGATGCAAGAGAAGGGGACCCCTGCAGATTTTGTTCTCTGCATTGGCGACGACAGATCAGACGAAGACATGTTCAAGGTGATCTCAAGTTCCATGGCAGGCCCATCGATAGCCCCCCGAGCTGAAATTTTTGCTTGTACGGTAGGGAAGAAACCGAGCAAAGCCAAGTACTACCTCGACGATCCATCAGAAATTGCAAGGTTGTTGCACGGTTTGGCCTCGGTGTCGAGGCAGAACGTGGCGCTCTATCCATCCCAAAACTGA 2583 47.77 MVSRSYSNLLELATGESPSFGRINRQIPRIMTVAGLISDIDDDPTESVSSEPSSSSAPRDRIIIVANELPIRAHRKSGGGAAAWTFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLTQDLYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLQRTEEKVSELIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKATVKRINDMFGQPGYEPVVLIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYVVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRQRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCLETLNTLCRDKNNMVFVVSAKSRKTLAEWFASCENLGIAAEHGYFIRLKQDEEWEASLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWSYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSAMQEKGTPADFVLCIGDDRSDEDMFKVISSSMAGPSIAPRAEIFACTVGKKPSKAKYYLDDPSEIARLLHGLASVSRQNVALYPSQN 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12420797 12425182 - Maker00028503 Lcy7g1119 637951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1119 860 NCBIfam trehalose-phosphatase 596 845 IPR003337 GO:0005992(InterPro)
Lcy7g1119 860 SUPERFAMILY HAD-like 598 845 IPR036412 -
Lcy7g1119 860 Gene3D - 597 709 IPR023214 -
Lcy7g1119 860 Gene3D - 727 856 IPR023214 -
Lcy7g1119 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 316 - -
Lcy7g1119 860 Pfam Trehalose-phosphatase 601 836 IPR003337 GO:0005992(InterPro)
Lcy7g1119 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 848 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy7g1119 860 Gene3D Glycogen Phosphorylase B; 54 317 - -
Lcy7g1119 860 Pfam Glycosyltransferase family 20 61 551 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy7g1119 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 554 - -
Lcy7g1119 860 CDD GT20_TPS 61 551 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy7g1119 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 597 714 - -
Lcy7g1119 860 NCBIfam HAD-IIB family hydrolase 600 801 IPR006379 -
Lcy7g1119 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 727 857 - -
Lcy7g1119 860 CDD HAD_TPP 599 837 - -
Lcy7g1119 860 FunFam Alpha,alpha-trehalose-phosphate synthase 318 535 - -
Lcy7g1119 860 Gene3D Glycogen Phosphorylase B; 318 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0196 Lcy-Chr7:1718723 Lcy7g1119 Lcy-Chr7:12420797 0 dispersed
Lcy7g1119 Lcy-Chr7:12420797 Lcy8g1559 Lcy-Chr8:42226385 8.13E-237 dispersed
Lcy6g2240 Lcy-Chr6:46976806 Lcy7g1119 Lcy-Chr7:12420797 0 transposed
Lcy6g2071 Lcy-Chr6:43864074 Lcy7g1119 Lcy-Chr7:12420797 4.68E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1119 K16055 - vvi:100252552 1490.32