Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1144 ATGAAATGCACTAGTTACCACGTCCACGCCTTTCTCGGCCGTTCTTCCTATTTCCCCTCCCCGTTTGACCGTTACCGTCGCCACCGGCCGATGTTCATTCCCGCTGCATTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTCGCCGACGGGTAGGCTTCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCACTCGGGGAAGGTTTCGAAAGTGAAGTTATGTCCGGAATTTGCAGGCAGAGGGAGGTATTTTGATTTTAGGTCCAACTTCATTCCTGTGTCGATTGATTATGCCGAGGAGTCGCCTCTGTGTACCACGCTCTCTAAGGATGGGTTTAAAGTTCGAACGGTTGAGCATTTGCTTTCTGCACTGGAGGCTATGGGGGTTGACAATTGCAGGATCGAGATAGAAAATGTAGATGCTACAGATAGTGAAGTCGAGGTTCCAATTTTTGATGGATCTGCGGGTAAATGGGTGAATGCAATTGAGGAGGTCGGTCTTAAGTTGGCTTTAGACGAGTGTGGCAACTGCTGTGAGAAAATGGCACCATATGTAAATGAACCTGTTCATGTGTGGAGGAATGACTGTTATCTTGTTGCTTTTCCAGCCTCAGCAGTTCGTATTACTTATGGAATTGACTTTCCTCAGGTGCCTGGCATTGGCTGCCAGTGGTTTTCTACTGCCCCTTTGGACAACGTGTTCTATGCCAATCAAATAGCCCCATCAAGAACCTTCTGCATTTACGAGGAGGACAACGACTCTTTATCTCCTTCTCCAAGAGTCTCTAGGCGTATTCTTAGAGAACAAATCGAAGACTTAACTGCCCAAGATCATATTCATTGGCATCAACGTTGCAAAATAAATTGGCTTAAAAAGGGTGACGAAAATACTAAATTCTTCCATCGTATCTTGGTTGCTTGTAAAAGGAAGAATTCGATTAATGAGGTATTGTCCCGTCAGGGGGTCAGTTTAGTTACAACTACTAATATTGAAAGGGAATTCATTGATTTCTATCGAAATTTGTTCACCAAAGATAACCATCCCCGGTTTCTCCCAATCAATGTTGATTGGTGCCCTATTAGTGAGACTCAGGCGTTAGGGTTGGAAGTTGCCTTTTCTGAGGAAGAAGTATTCCAGGCCATGAATTCTCTAGGATCAAGTCATATCTAG 1188 45.12 MKCTSYHVHAFLGRSSYFPSPFDRYRRHRPMFIPAAFNALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDATDSEVEVPIFDGSAGKWVNAIEEVGLKLALDECGNCCEKMAPYVNEPVHVWRNDCYLVAFPASAVRITYGIDFPQVPGIGCQWFSTAPLDNVFYANQIAPSRTFCIYEEDNDSLSPSPRVSRRILREQIEDLTAQDHIHWHQRCKINWLKKGDENTKFFHRILVACKRKNSINEVLSRQGVSLVTTTNIEREFIDFYRNLFTKDNHPRFLPINVDWCPISETQALGLEVAFSEEEVFQAMNSLGSSHI 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12933019 12940464 - Maker00028833 Lcy7g1144 637976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1144 395 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 31 256 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
Lcy7g1144 395 SUPERFAMILY Ribosomal protein S5 domain 2-like 193 256 IPR020568 -
Lcy7g1144 395 Gene3D lpxc deacetylase, domain 1 53 178 IPR015870 GO:0008759(InterPro)|GO:0009245(InterPro)
Lcy7g1144 395 Gene3D lpxc deacetylase, domain 2 190 262 IPR011334 GO:0008759(InterPro)|GO:0009245(InterPro)
Lcy7g1144 395 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 55 256 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
Lcy7g1144 395 SUPERFAMILY Ribosomal protein S5 domain 2-like 54 174 IPR020568 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1144 Lcy-Chr7:12933019 Lcy5g1496 Lcy-Chr5:35712647 1.82E-50 dispersed
Lcy4g1479 Lcy-Chr4:37071576 Lcy7g1144 Lcy-Chr7:12933019 8.69E-11 wgd
Lcy4g2274 Lcy-Chr4:49243757 Lcy7g1144 Lcy-Chr7:12933019 8.29E-08 wgd
Lcy4g1465 Lcy-Chr4:36744521 Lcy7g1144 Lcy-Chr7:12933019 1.76E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1144 K02535 - csv:101205101 422.165