Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1157 ATGGCCGAACAGTCGACTCTCTCCGGAAGCGTTGGTGCACCCAACAGTGAGAACGTGCTGCAGAAACACGTGGCGTTCTTCGACAGGAACCACGACGGCGTCGTTTATCCCTGGGAAACCTTCAAGGGCTTCCGAGCAATTGGGGCCAATTTTTTCTTGTCCTCCTTCGCTGCCTTTTTCATTAACGTTGGACTCAGCTCAAAAACCCGACCGGGGAAATTTCCTAATTTTATGTTCCCAATTGAGATAAAGAACATTCAACTTGCCAAACATGGAAGTGATTCTGGTGTATATGATTCTGAGGGAAGGTTTGTTGCTTCAAAATTTGAAGAAATTTTCAAGAAGTTTGCACTGACCCATCCTAATGCCTTGACAGAGAAAGAGCTTCAAGCTTTGCTCAAGGCAAATAGAGAGCCCAAAGACTATTCAGGATGGTTTGCTGCATGGACAGAATGGACAGTTCTATACAACCTTTGCAAAGATGAGAAAGGTTTACTTAAAAAGGAAACTGTGAAGGCTGTTTATGATGGAAGCTTATTTGAACATATGGAGAAAGAGAGAGCATCAAAGAAGAAGAAATGA 582 43.3 MAEQSTLSGSVGAPNSENVLQKHVAFFDRNHDGVVYPWETFKGFRAIGANFFLSSFAAFFINVGLSSKTRPGKFPNFMFPIEIKNIQLAKHGSDSGVYDSEGRFVASKFEEIFKKFALTHPNALTEKELQALLKANREPKDYSGWFAAWTEWTVLYNLCKDEKGLLKKETVKAVYDGSLFEHMEKERASKKKK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13214063 13221235 + Maker00028530 Lcy7g1157 637989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1157 193 Pfam Caleosin related protein 17 183 IPR007736 -
Lcy7g1157 193 PANTHER PEROXYGENASE 3-RELATED 14 191 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
Lcy7g1157 193 SUPERFAMILY EF-hand 18 138 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1157 K17991 - - csv:101213829 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1457 Lcy-Chr4:36470017 Lcy7g1157 Lcy-Chr7:13214063 7.01E-59 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g1157 . 19 193 Pollen Coat Proteome AT1G23240 56.0 1.2e-56 217.2
Lcy7g1157 . 19 193 Pollen Coat Proteome AT1G23240 56.0 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36