Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1184 ATGCTTGCCACACCGCCTCCGATGCTTAAGTCAGAAATCGGAAGGATGAGAGCAAGAGAGCAAGAGGGGAGGATAGAGTATAGAGTTCGGGATCCCTTCTTTAGTGGCGAAGAGGGGTTTAAATACCTGCTCATGCTCCTAGGGTTTTTTAGGAATTCGGAGGCGTTTTGGGACGAACCAGGCGGAACTGGGGCGACTAGAGGCAGCAGCGGAGTCGGAGGAACTCGGCCCTCGCAAGCGGGCCGACTACAGCCGCCCCTTTTGATTTTCTCATCTCAACTTTCCTCAAACTTTTCCGATTCAATTCCACCTGATTTCGGCCATTTTCGCCGTTTCCAACTTCATGGCCTAGACGAGCATGACGAAGTCGAAGAGTTTGCTACAGAGCCTCATGAGACCATTCAGATTCGGTTCCTCAAGAGCCAGGGCGAGGAGGATTTGGAGCAGATTGCTGCTAAGGAACAGAAGGTTATTCCGTTCGAAACCTTAGTTGAAGCTACCAACAATTTTCATCAAAATCACAAGCTCGGCGAAGGCGGTTTTGGTCCGGTTTACAAGGGGAAGTTGAAAGATGGAAGAGTGATTGCAGTCAAGAAGTTATCACATTATTCGAAACAAGGGAGAAGGGAGTTTATGACCGAGGCCAAGTTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTGTGTGCATGGTTCAGAGAAACTTCTGGTTTACGAATACGTCATGAATGAGAGCCTCGACAAGCTTCTCTTTAAATCCAGCAGACGAGAAGAACTTGATTGGAAGAGGAGGTATGAAATAATCTTTGGCATAGCACGAGGCTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATTAAGGCCAGTAACATTTTGTTGGACGACAAATGGGTCCCGAAGATTGCAGATTTCGGCATGGCCCGTCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCCGAATATGTAATGCACGGACATCTATCAGCGAAGGCCGATGTTTTTAGCTTTGGCGTTTTGGTTTTGGAACTCATCAGCGGCCAACGTAATTCGTCATTTAGTTCATTTGTGGATGCCGATAATCTACTTGATTGGGCTTACAAGCTATACAAGAAAGGCAGGAGCTTGGAGATCATGGACCCAACATTAGCATCATCAGCTGTTCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTCTGCACACAAGGCGATCCACAACTACGGCCGACCATGCCACGTGTAGTTTTGATCCTTTCAAAGAGACCTGGTACTTTGGAGGAACCGACGAGACCAGGAATACCCGGTTCTCGCTATAGAAGATCTCGTAGAACAAGTGCATCGTCCTCCAATGCTGGAACCTCGGGTGCATCTTATACCTATGCTTCAACAACCAATACCGTTACTGGAACTATAACCCCAACTGCAACCGCAAACGCAACCGAAATCGCTTCTGGTTCTTCTACAGTTAGTCGAGGACACGATACTCGTGGGAAACGTCCCATGGAAGAAGGTTAG 1581 47.12 MLATPPPMLKSEIGRMRAREQEGRIEYRVRDPFFSGEEGFKYLLMLLGFFRNSEAFWDEPGGTGATRGSSGVGGTRPSQAGRLQPPLLIFSSQLSSNFSDSIPPDFGHFRRFQLHGLDEHDEVEEFATEPHETIQIRFLKSQGEEDLEQIAAKEQKVIPFETLVEATNNFHQNHKLGEGGFGPVYKGKLKDGRVIAVKKLSHYSKQGRREFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVMNESLDKLLFKSSRREELDWKRRYEIIFGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSSFSSFVDADNLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVTMCIQIGLLCTQGDPQLRPTMPRVVLILSKRPGTLEEPTRPGIPGSRYRRSRRTSASSSNAGTSGASYTYASTTNTVTGTITPTATANATEIASGSSTVSRGHDTRGKRPMEEG 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13874394 13881739 + Maker00028682 Lcy7g1184 638016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1184 526 FunFam Cysteine-rich receptor-like protein kinase 10 247 452 - -
Lcy7g1184 526 SUPERFAMILY Protein kinase-like (PK-like) 154 440 IPR011009 -
Lcy7g1184 526 MobiDBLite consensus disorder prediction 462 513 - -
Lcy7g1184 526 SMART serkin_6 170 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1184 526 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 146 475 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lcy7g1184 526 Gene3D Phosphorylase Kinase; domain 1 132 245 - -
Lcy7g1184 526 FunFam Cysteine-rich receptor-like protein kinase 10 136 245 - -
Lcy7g1184 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g1184 526 CDD STKc_IRAK 176 442 - -
Lcy7g1184 526 MobiDBLite consensus disorder prediction 444 526 - -
Lcy7g1184 526 ProSiteProfiles Protein kinase domain profile. 170 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1184 526 Gene3D Transferase(Phosphotransferase) domain 1 246 448 - -
Lcy7g1184 526 Pfam Protein tyrosine and serine/threonine kinase 171 437 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1184 Lcy-Chr7:13874394 Lcy9g1375 Lcy-Chr9:38622455 2.69E-87 dispersed
Lcy2g0337 Lcy-Chr2:2780046 Lcy7g1184 Lcy-Chr7:13874394 4.88E-99 transposed
Lcy11g1053 Lcy-Chr11:31829899 Lcy7g1184 Lcy-Chr7:13874394 6.36E-45 wgd
Lcy2g1171 Lcy-Chr2:11739012 Lcy7g1184 Lcy-Chr7:13874394 2.95E-57 wgd
Lcy4g0748 Lcy-Chr4:8992338 Lcy7g1184 Lcy-Chr7:13874394 1.32E-84 wgd
Lcy5g1291 Lcy-Chr5:30557563 Lcy7g1184 Lcy-Chr7:13874394 3.42E-63 wgd
Lcy6g1421 Lcy-Chr6:21144447 Lcy7g1184 Lcy-Chr7:13874394 2.37E-07 wgd
Lcy6g1627 Lcy-Chr6:29573455 Lcy7g1184 Lcy-Chr7:13874394 5.66E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66085 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1184 - - - 0.0