Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g1196 | ATGTATAGTTCTCATCTCAAAAAGTTCAAGGAGAAAAAGAGGAATTCAAGACCATGCGAAGATTTTGAAATGAGCCATGGGACAGGATTTCTTCGAATTCGCCTGTTGCGAGGCAATAATCTCGCCATTCGCGATGCTCCCACCCGCAGCAGCGATCCCTACGTTGTCATCTCCACCGCTCACCAGATTTTGTCTTTCGCAGCTACGCAAACGAAATTCAAATCTCGCGTGGTGAAAAAGAACTGCAATCCAGTATGGAACGAGGAATTCACACTTTCGATTACCGATATCAACACACCAATCAAATTAGCAGTGTTCGACAAAGATAGGTTCACGAAAGACGACGGAATGGGGGATGCAGAGATCGACATAAATCCATACATAGAGTGTTTGAATATGGGATTAGAGAATCTGCCAAATGGGTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACTGCCTTGCAGATGAGAGCTCTTGTGTTTGGAACGATGGCAAGATCATCCAAGACATGGCTCTCCGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAGATTCAGTTGTCCAATGTTTCTGCGATCAAAGGCCTAAGAACCTACTCTTTAGCCTGA | 618 | 44.17 | MYSSHLKKFKEKKRNSRPCEDFEMSHGTGFLRIRLLRGNNLAIRDAPTRSSDPYVVISTAHQILSFAATQTKFKSRVVKKNCNPVWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDINPYIECLNMGLENLPNGCVVKRVQPSRSNCLADESSCVWNDGKIIQDMALRLQNVECGEIMIQIQLSNVSAIKGLRTYSLA | 205 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 14166702 | 14168844 | - | Maker00028755 | Lcy7g1196 | 638028 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g1196 | 205 | CDD | C2_ArfGAP | 29 | 182 | - | - | |
| Lcy7g1196 | 205 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 19 | 132 | IPR035892 | - | |
| Lcy7g1196 | 205 | Gene3D | C2 domain | 24 | 195 | IPR035892 | - | |
| Lcy7g1196 | 205 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 25 | 195 | IPR044562 | - | |
| Lcy7g1196 | 205 | Pfam | C2 domain | 31 | 126 | IPR000008 | - | |
| Lcy7g1196 | 205 | ProSiteProfiles | C2 domain profile. | 12 | 140 | IPR000008 | - | |
| Lcy7g1196 | 205 | SMART | C2_3c | 30 | 136 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0383 | Lcy-Chr2:3172026 | Lcy7g1196 | Lcy-Chr7:14166702 | 9.40E-61 | dispersed | |
| Lcy5g2379 | Lcy-Chr5:46585331 | Lcy7g1196 | Lcy-Chr7:14166702 | 6.02E-57 | dispersed | |
| Lcy7g0692 | Lcy-Chr7:6404255 | Lcy7g1196 | Lcy-Chr7:14166702 | 6.86E-30 | dispersed | |
| Lcy10g1388 | Lcy-Chr10:37243195 | Lcy7g1196 | Lcy-Chr7:14166702 | 3.96E-74 | wgd |
Pathway information