Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1209 ATGGCCGGAATTGTCGCCGGCGACAGCGACAGTCCACCGGCTCTGGCTTTACTGGACGTTGTTCGCGATGTGGTTCGGATGTCGGCGGGGACGAACGGTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTGAAGGGCGTCGAATTTCGACCTGTCGATGCATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTGTGGTGCTGTTACTGGGAGGGATTCGTCTACGAGTCCGTGGCTATGTGATTTAGTGGCGGCAATGAAGGATGCTAAGCGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTAGTTTGTTTCTCAAGAAAATTTTGATGATGGTTTTGTCATCCGAAATACAGAAAGGGGAAAAATGGTCACATAATGTATTTGTTGAGGAAGAAGTTTCCAAGAAGATACTCTTCCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTAAGAGCCCAGTTGAGAAGAGCAGCAGAAAAATATGGGTCTCTTACTGCAATTCCGCCATCGGTTGTTCAATCTCAGTTGCTGAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGCTTTTCCAAATTGTAGAGGCTTGATGAACAATGATGTGGATCAGCTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTGATGGACAGGATGACTCTGCCAGAAAGAGTGGAGACCAGGTTAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACATATGAGAGATCTTATGTTCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTAACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCAACTGGGCTAACCAATGGGAAGATCAAAAAGTGTGACGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTTACTAGCCATTCGATCGAGGAGCGGAGAGCTTCTGTGACTGAACTTCGGTCTCTATCGAAAAGAAGCACAGATAATAGAATACTGATCGCAGAAGCAGGAGCAATTCCGAATTTGGTCAATCTGTTAACTGCTGATGATGTTTTAATTCAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTAAGAGTTGGAAGCATGGAAGCGAGGGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTCCGGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATTATTCCAGCTCTATTAAAGATGCTTACCGACTCGGTCAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAGGCCAGTACCATACCTGTTCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCAGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGAAAATCTTTCTTGCATAAGCAGGCTCGGCGCCGTGATTCCACTGACCGAGCTCGCTAAGAGTGGCACAGAGAGAGCAAAAAGAAAGGCTACTTCACTGCTGGAGCATCTTCGAAAACTACAGCAGCTATAG 2073 44.43 MAGIVAGDSDSPPALALLDVVRDVVRMSAGTNGGEVFKKDCTDLVRRIVLLTHLFEEIRDLKGVEFRPVDASCSSSSSSSSASCGAVTGRDSSTSPWLCDLVAAMKDAKRLVFIASTFRSCSSSSSLFLKKILMMVLSSEIQKGEKWSHNVFVEEEVSKKILFQFQCVTWKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWVDNFDVEENGVVDHEITVKFDAFPNCRGLMNNDVDQLIFKGLEKLPSSSEACSDGQDDSARKSGDQVKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14709934 14713369 - Maker00028492 Lcy7g1209 638041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1209 690 PANTHER U BOX DOMAIN-CONTAINING 36 686 - -
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 590 689 - -
Lcy7g1209 690 Coils Coil 187 207 - -
Lcy7g1209 690 Coils Coil 670 690 - -
Lcy7g1209 690 SMART Ubox_2 314 377 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 394 487 - -
Lcy7g1209 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 451 493 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 Gene3D - 486 589 IPR011989 -
Lcy7g1209 690 CDD RING-Ubox_PUB 312 364 IPR045210 -
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 488 588 - -
Lcy7g1209 690 Pfam Armadillo/beta-catenin-like repeat 440 479 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 Pfam Armadillo/beta-catenin-like repeat 523 561 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 MobiDBLite consensus disorder prediction 71 93 - -
Lcy7g1209 690 Gene3D - 394 485 IPR011989 -
Lcy7g1209 690 ProSiteProfiles U-box domain profile. 310 384 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g1209 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 492 534 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SUPERFAMILY RING/U-box 305 384 - -
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 308 384 - -
Lcy7g1209 690 Gene3D - 590 689 IPR011989 -
Lcy7g1209 690 MobiDBLite consensus disorder prediction 284 309 - -
Lcy7g1209 690 Pfam U-box domain 311 381 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g1209 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 384 IPR013083 -
Lcy7g1209 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 646 686 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 481 521 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 563 603 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 604 644 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 440 480 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 522 562 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SUPERFAMILY ARM repeat 401 684 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1209 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1209 Lcy-Chr7:14709934 Lcy8g1815 Lcy-Chr8:44541024 6.73E-61 dispersed
Lcy2g0835 Lcy-Chr2:7521509 Lcy7g1209 Lcy-Chr7:14709934 8.61E-18 transposed
Lcy2g1153 Lcy-Chr2:11543700 Lcy7g1209 Lcy-Chr7:14709934 8.68E-14 transposed
Lcy10g1442 Lcy-Chr10:38092569 Lcy7g1209 Lcy-Chr7:14709934 1.06E-101 wgd
Lcy2g1340 Lcy-Chr2:15075013 Lcy7g1209 Lcy-Chr7:14709934 4.27E-13 wgd
Lcy7g1209 Lcy-Chr7:14709934 Lcy8g0142 Lcy-Chr8:3519511 1.27E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40