Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1209 ATGGCCGGAATTGTCGCCGGCGACAGCGACAGTCCACCGGCTCTGGCTTTACTGGACGTTGTTCGCGATGTGGTTCGGATGTCGGCGGGGACGAACGGTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTGAAGGGCGTCGAATTTCGACCTGTCGATGCATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTGTGGTGCTGTTACTGGGAGGGATTCGTCTACGAGTCCGTGGCTATGTGATTTAGTGGCGGCAATGAAGGATGCTAAGCGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTAGTTTGTTTCTCAAGAAAATTTTGATGATGGTTTTGTCATCCGAAATACAGAAAGGGGAAAAATGGTCACATAATGTATTTGTTGAGGAAGAAGTTTCCAAGAAGATACTCTTCCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTAAGAGCCCAGTTGAGAAGAGCAGCAGAAAAATATGGGTCTCTTACTGCAATTCCGCCATCGGTTGTTCAATCTCAGTTGCTGAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGCTTTTCCAAATTGTAGAGGCTTGATGAACAATGATGTGGATCAGCTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTGATGGACAGGATGACTCTGCCAGAAAGAGTGGAGACCAGGTTAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACATATGAGAGATCTTATGTTCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTAACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCAACTGGGCTAACCAATGGGAAGATCAAAAAGTGTGACGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTTACTAGCCATTCGATCGAGGAGCGGAGAGCTTCTGTGACTGAACTTCGGTCTCTATCGAAAAGAAGCACAGATAATAGAATACTGATCGCAGAAGCAGGAGCAATTCCGAATTTGGTCAATCTGTTAACTGCTGATGATGTTTTAATTCAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTAAGAGTTGGAAGCATGGAAGCGAGGGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTCCGGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATTATTCCAGCTCTATTAAAGATGCTTACCGACTCGGTCAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAGGCCAGTACCATACCTGTTCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCAGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGAAAATCTTTCTTGCATAAGCAGGCTCGGCGCCGTGATTCCACTGACCGAGCTCGCTAAGAGTGGCACAGAGAGAGCAAAAAGAAAGGCTACTTCACTGCTGGAGCATCTTCGAAAACTACAGCAGCTATAG 2073 44.43 MAGIVAGDSDSPPALALLDVVRDVVRMSAGTNGGEVFKKDCTDLVRRIVLLTHLFEEIRDLKGVEFRPVDASCSSSSSSSSASCGAVTGRDSSTSPWLCDLVAAMKDAKRLVFIASTFRSCSSSSSLFLKKILMMVLSSEIQKGEKWSHNVFVEEEVSKKILFQFQCVTWKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWVDNFDVEENGVVDHEITVKFDAFPNCRGLMNNDVDQLIFKGLEKLPSSSEACSDGQDDSARKSGDQVKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14709934 14713369 - Maker00028492 Lcy7g1209 638041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1209 690 PANTHER U BOX DOMAIN-CONTAINING 36 686 - -
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 590 689 - -
Lcy7g1209 690 Coils Coil 187 207 - -
Lcy7g1209 690 Coils Coil 670 690 - -
Lcy7g1209 690 SMART Ubox_2 314 377 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 394 487 - -
Lcy7g1209 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 451 493 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 Gene3D - 486 589 IPR011989 -
Lcy7g1209 690 CDD RING-Ubox_PUB 312 364 IPR045210 -
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 488 588 - -
Lcy7g1209 690 Pfam Armadillo/beta-catenin-like repeat 440 479 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 Pfam Armadillo/beta-catenin-like repeat 523 561 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 MobiDBLite consensus disorder prediction 71 93 - -
Lcy7g1209 690 Gene3D - 394 485 IPR011989 -
Lcy7g1209 690 ProSiteProfiles U-box domain profile. 310 384 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g1209 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 492 534 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SUPERFAMILY RING/U-box 305 384 - -
Lcy7g1209 690 FunFam RING-type E3 ubiquitin transferase 308 384 - -
Lcy7g1209 690 Gene3D - 590 689 IPR011989 -
Lcy7g1209 690 MobiDBLite consensus disorder prediction 284 309 - -
Lcy7g1209 690 Pfam U-box domain 311 381 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy7g1209 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 384 IPR013083 -
Lcy7g1209 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 646 686 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 481 521 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 563 603 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 604 644 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 440 480 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SMART arm_5 522 562 IPR000225 GO:0005515(InterPro)
Lcy7g1209 690 SUPERFAMILY ARM repeat 401 684 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1209 Lcy-Chr7:14709934 Lcy8g1815 Lcy-Chr8:44541024 6.73E-61 dispersed
Lcy2g0835 Lcy-Chr2:7521509 Lcy7g1209 Lcy-Chr7:14709934 8.61E-18 transposed
Lcy2g1153 Lcy-Chr2:11543700 Lcy7g1209 Lcy-Chr7:14709934 8.68E-14 transposed
Lcy10g1442 Lcy-Chr10:38092569 Lcy7g1209 Lcy-Chr7:14709934 1.06E-101 wgd
Lcy2g1340 Lcy-Chr2:15075013 Lcy7g1209 Lcy-Chr7:14709934 4.27E-13 wgd
Lcy7g1209 Lcy-Chr7:14709934 Lcy8g0142 Lcy-Chr8:3519511 1.27E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1209 - - - 0.0