Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1245 GCTGTCAAGCTTCTCCAGAGGAATAATCTCAATCACAGACACGCCTCTGTGGACCCTCACAAGGTTTCTTTATTCCCCATAATCGGATTTCTCGCAATCAGAACTTCAGAGGATAAGGCCCGCACTTCGAGGGCTCTGTTTTTCAAGCAAGAACGGTTTTGGTTGAATTTGTTTGTTGGTTCTATGTTATTACTTGCATTTATATTTTGTGCTAGTGATTCTAACTTTCATCATTTCAATCAGAATATGGTTGACAAGGAATTTTTTACCGAGTATGGTGAAGCTACTCAATATGAAATTGAAGAAGTAGTTGGTAAAGGAAGCTATGGGGTTGTTGCATCTGCCATAGATACTCACTCTGGTGAGAGAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTCCGGTTTCTCCATCATCCTGATATTGTTGATATAAAACATATAATGCTCCCTCCATCCAGAAGGGAGTTCAAAGATCTGTACGTTGTTTTTGAGTTGATGGAATCTGACCTTCATCATGTACTCAAGGCTAATGATGATCTCACCCCTCAACATCATCAATTTTTCTTGTATCAACTCCTTAGAGCCTTGAAGTATATCCATTCAGCACATGTGTTCCATAGAGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGCGTCTTTTACTGATGCCCCGTCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATCTTTGCTGAAATGTTGGCAGGCAAGCCGCTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATGACTGACTTACTTGGTACTCCTTCGGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGATATTTGAATAGCATGAAAAAAAAGCCTCCAGTTCCTCTGTCAAGAAAGTTCCCTAATGCAGATCCACTTGCTCTTCGTTTACTTGAGCGTCTGCTTGCATTTGATCCTGACGATCGTCCTTCTGCAGAGGAGGCATTAGCTCATCCATATTTCTATGGACTGGCAAATTTGGAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACTAAAGATGATGTTAGAGAGCTTATTTATAGAGAAATTTTGGAGTATCATCCTCAAATGCTACAGGAGTACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGCGTCAATTTGATCGTCTTGAGGAACGTTCTGGTAAAGGTGAGAGGGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACACCAAGAGATGAAGATGATGATGAAAATTGTAAAACAGAACAGCGAAATGCAGCTTCAGCTGAAAATACAACACCTCAAAGTCCTCCTGGACCTGGTTATTCATTAACTGCTCAGAATGGTTCTGTTCATGCAGACTGCAGTAATTATAACCTGCTGAAGAGTGCAAGTATAAATTTTTCAAAATGGGTGGATTAA 1668 40.89 AVKLLQRNNLNHRHASVDPHKVSLFPIIGFLAIRTSEDKARTSRALFFKQERFWLNLFVGSMLLLAFIFCASDSNFHHFNQNMVDKEFFTEYGEATQYEIEEVVGKGSYGVVASAIDTHSGERVAIKKINNVFEHVSDATRILREIKLLRFLHHPDIVDIKHIMLPPSRREFKDLYVVFELMESDLHHVLKANDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFTDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGKSVVHELDLMTDLLGTPSAECIAKIRNEKAKRYLNSMKKKPPVPLSRKFPNADPLALRLLERLLAFDPDDRPSAEEALAHPYFYGLANLEDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDRFKRQFDRLEERSGKGERGSPLLRKHASLPRERIYTPRDEDDDENCKTEQRNAASAENTTPQSPPGPGYSLTAQNGSVHADCSNYNLLKSASINFSKWVD 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15588274 15594890 - Maker00028598 Lcy7g1245 638077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1245 555 ProSiteProfiles Protein kinase domain profile. 98 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1245 555 Gene3D Phosphorylase Kinase; domain 1 114 435 - -
Lcy7g1245 555 CDD STKc_TDY_MAPK 97 434 - -
Lcy7g1245 555 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 95 430 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy7g1245 555 FunFam Mitogen-activated protein kinase 413 435 - -
Lcy7g1245 555 MobiDBLite consensus disorder prediction 506 530 - -
Lcy7g1245 555 SUPERFAMILY Protein kinase-like (PK-like) 95 394 IPR011009 -
Lcy7g1245 555 Gene3D Transferase(Phosphotransferase) domain 1 184 412 - -
Lcy7g1245 555 FunFam Mitogen-activated protein kinase 83 190 - -
Lcy7g1245 555 Pfam Protein kinase domain 98 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1245 555 FunFam Mitogen-activated protein kinase 184 412 - -
Lcy7g1245 555 MobiDBLite consensus disorder prediction 465 505 - -
Lcy7g1245 555 MobiDBLite consensus disorder prediction 465 530 - -
Lcy7g1245 555 ProSitePatterns MAP kinase signature. 133 236 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1245 555 SMART serkin_6 98 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1245 555 ProSitePatterns Protein kinases ATP-binding region signature. 104 128 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1955 Lcy-Chr13:38599649 Lcy7g1245 Lcy-Chr7:15588274 2.47E-101 dispersed
Lcy4g0766 Lcy-Chr4:9168547 Lcy7g1245 Lcy-Chr7:15588274 4.11E-227 dispersed
Lcy5g2387 Lcy-Chr5:46674684 Lcy7g1245 Lcy-Chr7:15588274 7.09E-229 dispersed
Lcy6g0925 Lcy-Chr6:9406572 Lcy7g1245 Lcy-Chr7:15588274 5.88E-107 dispersed
Lcy7g1245 Lcy-Chr7:15588274 Lcy8g1622 Lcy-Chr8:42791873 9.85E-220 dispersed
Lcy2g0392 Lcy-Chr2:3286615 Lcy7g1245 Lcy-Chr7:15588274 2.16E-245 transposed
Lcy13g0741 Lcy-Chr13:11249957 Lcy7g1245 Lcy-Chr7:15588274 1.25E-103 wgd
Lcy7g1245 Lcy-Chr7:15588274 Lcy7g1665 Lcy-Chr7:32912490 2.33E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66086 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1245 - - - 0.0