Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1305 ATGGCAGCTTCATCGATGGCTCTGCCTTCCCCATCTCTGGCTGGCCAAGCCGTGAAACTGTCCCCTGCCGCCTCTGACCTCCTCGGCGACGGTCGTGTCACCATGAGGAAAACCGTCGGCAAGCCCAAGCTCGTCTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCAACTACGGCTGGGACACCGTCGGCCTCTCTGCCGACCCCAAGACCTTCGCCAAGAACCGCGAGCTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGGGCTCTCGGCTGCGTGTTCCTCGAGCTCCTCTCTCGCAACGACGTCAAATTTGGCGAGGCCGTGTGGTTCAAAGTCGGCTCGCAGATCTTCAGCGAAGGTGGGCTAGACTATTTGGGCAACCCGAGCCTAGTCCATGCTCCAGACCTCGTCGAAACGGGGAGGAGGGTTTCCTCCTCCCCATTCCAGCATTAA 522 61.49 MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELLSRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLVETGRRVSSSPFQH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18083029 18083550 + Maker00028444 Lcy7g1305 638137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1305 173 SUPERFAMILY Chlorophyll a-b binding protein 50 156 - -
Lcy7g1305 173 Gene3D Chlorophyll a/b binding protein domain 58 166 - -
Lcy7g1305 173 FunFam Chlorophyll a-b binding protein, chloroplastic 58 150 - -
Lcy7g1305 173 Pfam Chlorophyll A-B binding protein 67 138 IPR022796 -
Lcy7g1305 173 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 159 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1305 Lcy-Chr7:18083029 Lcy8g1625 Lcy-Chr8:42832368 9.20E-94 dispersed
Lcy2g1692 Lcy-Chr2:25394891 Lcy7g1305 Lcy-Chr7:18083029 4.45E-59 wgd
Lcy7g1305 Lcy-Chr7:18083029 Lcy9g0400 Lcy-Chr9:11290025 1.16E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1305 K08912 - csv:101213845 295.049