Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1317 ATGGGCGACGACGGCAATAATACCAGCAATGGCGGTAGCCGGTTGGCGCCGCCGGGAGAGCACTGTGTGGAGATTGTTCATCCGGTGGTGCTGCCGCCTCACAGAAGCGGGTTGCGGAAGCTGGGCAACCGGCTGAAGGAAACATTCTTTCCCGACGACCCGCTCCGGCAGTTCAAAGGGCAGTCTCCGGCGAGGAAATGGGTGATTGGAGCTCAGTATATTTTCCCAATTCTTCAATGGGGGCCTCATTATAATCTCAGGCTTTTTAAGTCTGATGTTGTTGCTGGCCTCACCATTGCTAGCTTGGCCATCCCTCAGGGTATTAGCTATGCTAAGCTTGCTAATTTGCCTCCCATTGTTGGGCTTTATTCAAGCTTCGTTCCACCACTGATATACGCTGTTCTTGGAAGCTCAAGAGACCTAGCTGTGGGACCTGTTTCAATAGCATCCCTAATACTTGGATCCATGTTGAGGCAAGAAGTTTCCCCCATCAAAGATCCCATACTCTTCCTCCAACTCGGCTTCACTTCCACCTTCTTCGCCGGTCTCTTCCAAGCCTCGCTCGGCTTCTTAAGACTTGGGTTTATAATTGATTTTCTATCGAAGGCGACTTTGATTGGATTCATGGCGGGAGCGGCCATTATTGTGTCTCTGCAGCAGCTGAAAGGGTTGCTTGGAATCACCCATTTCACTACACAGATGGGTTTGATTCCTGTTTTAAGCTCAGTTTTTCATCACACTCCAGAGAGCATGAAAAGGCCAAGGTTGTTCTGGGTGTCAGCTGGAGCTCCTTTAGTATCTGTGATTCTTTCAACCATATTGGTTTTTGCATTCAAGGCCGATCGCCATGGCATCAGTATAATAGGAAAATTGCAAGAAGGATTGAACCCACCTTCATGGAACATGCTTCGTTTTCAAAGGTCACACCTTGGCCTTGTTATTAAGACTGGCCTCGTCACCGGCATCATCTCTCTCACAGAAGGAATCGCAGTGGGGCGAACTTTTGCAGCTATAAAAGACTACTGCGTCGACGGCAACAAGGAAATGATCGCTATCGGCCTCATGAACGTCGTCGGCTCTTTCACTTCTTGCTATATCACAACAGGTGCATTCTCGAGATCGGCCGTGAACCATAACGCGGGGGCGAAGACAGCGGTATCCAACATCGTAATGTCAGTGACGATCATGGTGACACTGCTGTTTCTGATGCCTCTGTTTCAGTACACGCCCAATCTGGTGCTGGCCGCCATCATCGTCACCGCGGTTGTCGGCCTCATCGACGTCCCCGCCGCCTATGCCATTTGGAAGGTCGACAAGTTCGATTTTGTTGTGATGCTCTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAGCATGGTCTCGCCATTGCTGTTGGCATATCCATTTTCAAGATCATCTTGCAAATCACAAGGCCAAAAACAGTGATATTAGGAAACATACCTGGAACAGATATATATAGAAACCTTGACCATTACAAAGATGCAATGAGTGTCCAAGGCTTCCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCCAACACTACATATCTCAATGAAAGGATTTTGAGATGGATTGAAGACTATGAAGCTGAAGATCGTGTCAAGAAGGAGGGCTCAGGCCTTCAGTTTGTCATTTTAGAATTATCAGCTGTGAGTGCTATAGACACTAGTGGAGTCCTACTCTTCAAGGATCTAAGAAGAGCATTGGAAAAGAAGGCTGTTGAGGCAATTTTGGAGAAGTTGCAAAAAGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTGTTTTTGACAGTGGGAGAGGCTATTGCTTCACTATCAGCATCAATGAAGGGACAATCCTAA 1872 47.28 MGDDGNNTSNGGSRLAPPGEHCVEIVHPVVLPPHRSGLRKLGNRLKETFFPDDPLRQFKGQSPARKWVIGAQYIFPILQWGPHYNLRLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLGFTSTFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTTQMGLIPVLSSVFHHTPESMKRPRLFWVSAGAPLVSVILSTILVFAFKADRHGISIIGKLQEGLNPPSWNMLRFQRSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYCVDGNKEMIAIGLMNVVGSFTSCYITTGAFSRSAVNHNAGAKTAVSNIVMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDVPAAYAIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVILGNIPGTDIYRNLDHYKDAMSVQGFLILSIEAPINFANTTYLNERILRWIEDYEAEDRVKKEGSGLQFVILELSAVSAIDTSGVLLFKDLRRALEKKAVEAILEKLQKADENQEILRPNNVFLTVGEAIASLSASMKGQS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18615616 18626257 - Maker00028455 Lcy7g1317 638149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1317 623 ProSiteProfiles STAS domain profile. 498 615 IPR002645 -
Lcy7g1317 623 Pfam Sulfate permease family 89 447 IPR011547 GO:0016020(InterPro)
Lcy7g1317 623 Gene3D STAS domain 478 617 IPR036513 -
Lcy7g1317 623 CDD STAS_SulP_like_sulfate_transporter 499 608 - -
Lcy7g1317 623 NCBIfam sulfate permease 76 592 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g1317 623 Pfam STAS domain 502 592 IPR002645 -
Lcy7g1317 623 PANTHER SULFATE TRANSPORTER 46 613 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy7g1317 623 SUPERFAMILY SpoIIaa-like 504 614 IPR036513 -
Lcy7g1317 623 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1317 Lcy-Chr7:18615616 Lcy9g1604 Lcy-Chr9:41227016 5.73E-198 dispersed
Lcy7g1317 Lcy-Chr7:18615616 Lcy3g2098 Lcy-Chr3:48012647 2.15E-269 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1317 K17471 - csv:101219163 1056.97