Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1401 ATGAAGGAGGAAGGAGACTGCTTTCAAGGGTTTCAAGAGCAGCTTCTAATGCAACAATTCCAAACGATGCAACAAAACGGCGACGTTTTCGGAGTAGGAGGAGGAGGAGGGTTGATTTTTCCTGAAGTTTCTCCGATGATGTTTCCGCCGGCGACGACGACGACCGCGACGACCCTCCCTCAAGTCCACGGATTCAACCCGACCCGGGACCACCACGACCCGTTTATCCCGCCGCCGCCGCCAGCTTCCTACGCCAGCTTTTTCAATAGGAGAAATGCTTCTCTGCAGTTCCCTTACGATATTGCCAACAATAACCTTGGAATTGGGCAGATGGATCAGCCCGGTTCTGCCCCGTTTGATCTGCAGGCCGAGCTGACCAAGATGACCGCTCAGGAAATAATGGACGCCAAAGCACTTGCAGCCTCGAAAAGGCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAAAAACCATCTTGCTAAGCTACGAAGCTTGCTCCCAAGCACCACAAAAACCGACAAGGCATCATTGCTGGCAGAAGTAATCCAACATGTGAAAGAGCTTAAACGACAGACTACATTGATAGCCGACGTGAGTCCGGTGCCAACCGAGCTCGACGAGCTATCGGTGGACGTCGACGCCTCGGACGAGGATGGAAAGTTTGTGATAAAAGCCTCCCTTTGTTGCGAGGACAGGTCTGATCTCTTGCCGCAGATCATCAAAACCCTCAAATCCCTCCGCCTGAGAACCCTAAAAGCCGAGATCACAACCCTCGGTGGCCGTGTGAAGAACGTCTTGTTCATCACCGGCGACGACGACTCCTCCGGCGACCAACAAGAGCCACAACACCACCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGCCGTGATGGAAAAAGTTTGCAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAACAATCACAACAACATCAATATCATCGAACACAGGTCTCTCTAG 1005 51.54 MKEEGDCFQGFQEQLLMQQFQTMQQNGDVFGVGGGGGLIFPEVSPMMFPPATTTTATTLPQVHGFNPTRDHHDPFIPPPPPASYASFFNRRNASLQFPYDIANNNLGIGQMDQPGSAPFDLQAELTKMTAQEIMDAKALAASKRHSEAERRRRERIKNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSGDQQEPQHHHQYSISSIQEALKAVMEKVCSEDQSSSGSIKRQRTNNHNNINIIEHRSL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22044513 22047435 - Maker00035334 Lcy7g1401 638233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1401 334 Gene3D - 135 195 IPR036638 GO:0046983(InterPro)
Lcy7g1401 334 PANTHER TRANSCRIPTION FACTOR BHLH30 109 322 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy7g1401 334 CDD bHLH_AtAIG1_like 135 214 - -
Lcy7g1401 334 SMART finulus 146 195 IPR011598 GO:0046983(InterPro)
Lcy7g1401 334 FunFam transcription factor bHLH30 135 198 - -
Lcy7g1401 334 MobiDBLite consensus disorder prediction 308 334 - -
Lcy7g1401 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983(InterPro)
Lcy7g1401 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 194 IPR036638 GO:0046983(InterPro)
Lcy7g1401 334 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0678 Lcy-Chr11:18668235 Lcy7g1401 Lcy-Chr7:22044513 9.56E-47 dispersed
Lcy13g1474 Lcy-Chr13:33326218 Lcy7g1401 Lcy-Chr7:22044513 3.98E-31 dispersed
Lcy5g1837 Lcy-Chr5:41189921 Lcy7g1401 Lcy-Chr7:22044513 2.83E-34 dispersed
Lcy5g2314 Lcy-Chr5:46068220 Lcy7g1401 Lcy-Chr7:22044513 4.20E-18 dispersed
Lcy5g2316 Lcy-Chr5:46072127 Lcy7g1401 Lcy-Chr7:22044513 3.57E-18 dispersed
Lcy7g0414 Lcy-Chr7:3558474 Lcy7g1401 Lcy-Chr7:22044513 3.14E-89 dispersed
Lcy7g0420 Lcy-Chr7:3631794 Lcy7g1401 Lcy-Chr7:22044513 3.14E-89 dispersed
Lcy7g1401 Lcy-Chr7:22044513 Lcy8g1575 Lcy-Chr8:42367244 1.98E-31 dispersed
Lcy10g0891 Lcy-Chr10:27941587 Lcy7g1401 Lcy-Chr7:22044513 8.57E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20447 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1401 - - - 0.0