Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g1401 | ATGAAGGAGGAAGGAGACTGCTTTCAAGGGTTTCAAGAGCAGCTTCTAATGCAACAATTCCAAACGATGCAACAAAACGGCGACGTTTTCGGAGTAGGAGGAGGAGGAGGGTTGATTTTTCCTGAAGTTTCTCCGATGATGTTTCCGCCGGCGACGACGACGACCGCGACGACCCTCCCTCAAGTCCACGGATTCAACCCGACCCGGGACCACCACGACCCGTTTATCCCGCCGCCGCCGCCAGCTTCCTACGCCAGCTTTTTCAATAGGAGAAATGCTTCTCTGCAGTTCCCTTACGATATTGCCAACAATAACCTTGGAATTGGGCAGATGGATCAGCCCGGTTCTGCCCCGTTTGATCTGCAGGCCGAGCTGACCAAGATGACCGCTCAGGAAATAATGGACGCCAAAGCACTTGCAGCCTCGAAAAGGCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAAAAACCATCTTGCTAAGCTACGAAGCTTGCTCCCAAGCACCACAAAAACCGACAAGGCATCATTGCTGGCAGAAGTAATCCAACATGTGAAAGAGCTTAAACGACAGACTACATTGATAGCCGACGTGAGTCCGGTGCCAACCGAGCTCGACGAGCTATCGGTGGACGTCGACGCCTCGGACGAGGATGGAAAGTTTGTGATAAAAGCCTCCCTTTGTTGCGAGGACAGGTCTGATCTCTTGCCGCAGATCATCAAAACCCTCAAATCCCTCCGCCTGAGAACCCTAAAAGCCGAGATCACAACCCTCGGTGGCCGTGTGAAGAACGTCTTGTTCATCACCGGCGACGACGACTCCTCCGGCGACCAACAAGAGCCACAACACCACCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGCCGTGATGGAAAAAGTTTGCAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAACAATCACAACAACATCAATATCATCGAACACAGGTCTCTCTAG | 1005 | 51.54 | MKEEGDCFQGFQEQLLMQQFQTMQQNGDVFGVGGGGGLIFPEVSPMMFPPATTTTATTLPQVHGFNPTRDHHDPFIPPPPPASYASFFNRRNASLQFPYDIANNNLGIGQMDQPGSAPFDLQAELTKMTAQEIMDAKALAASKRHSEAERRRRERIKNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSGDQQEPQHHHQYSISSIQEALKAVMEKVCSEDQSSSGSIKRQRTNNHNNINIIEHRSL | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 22044513 | 22047435 | - | Maker00035334 | Lcy7g1401 | 638233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g1401 | 334 | Gene3D | - | 135 | 195 | IPR036638 | GO:0046983(InterPro) | |
Lcy7g1401 | 334 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 109 | 322 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy7g1401 | 334 | CDD | bHLH_AtAIG1_like | 135 | 214 | - | - | |
Lcy7g1401 | 334 | SMART | finulus | 146 | 195 | IPR011598 | GO:0046983(InterPro) | |
Lcy7g1401 | 334 | FunFam | transcription factor bHLH30 | 135 | 198 | - | - | |
Lcy7g1401 | 334 | MobiDBLite | consensus disorder prediction | 308 | 334 | - | - | |
Lcy7g1401 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 140 | 189 | IPR011598 | GO:0046983(InterPro) | |
Lcy7g1401 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 144 | 194 | IPR036638 | GO:0046983(InterPro) | |
Lcy7g1401 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 143 | 190 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0678 | Lcy-Chr11:18668235 | Lcy7g1401 | Lcy-Chr7:22044513 | 9.56E-47 | dispersed | |
Lcy13g1474 | Lcy-Chr13:33326218 | Lcy7g1401 | Lcy-Chr7:22044513 | 3.98E-31 | dispersed | |
Lcy5g1837 | Lcy-Chr5:41189921 | Lcy7g1401 | Lcy-Chr7:22044513 | 2.83E-34 | dispersed | |
Lcy5g2314 | Lcy-Chr5:46068220 | Lcy7g1401 | Lcy-Chr7:22044513 | 4.20E-18 | dispersed | |
Lcy5g2316 | Lcy-Chr5:46072127 | Lcy7g1401 | Lcy-Chr7:22044513 | 3.57E-18 | dispersed | |
Lcy7g0414 | Lcy-Chr7:3558474 | Lcy7g1401 | Lcy-Chr7:22044513 | 3.14E-89 | dispersed | |
Lcy7g0420 | Lcy-Chr7:3631794 | Lcy7g1401 | Lcy-Chr7:22044513 | 3.14E-89 | dispersed | |
Lcy7g1401 | Lcy-Chr7:22044513 | Lcy8g1575 | Lcy-Chr8:42367244 | 1.98E-31 | dispersed | |
Lcy10g0891 | Lcy-Chr10:27941587 | Lcy7g1401 | Lcy-Chr7:22044513 | 8.57E-207 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20447 | None | None | None | None | Lcy | TF |
Pathway information
