Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1449 ATGGCAATGGCTCGAGTAGCTGTTTCTGCGTTGATGTTGTTGCTTTTGGGTATGGCTTGTGATGCCCAACTTTCTTCTACATTTTACGATCAAACTTGTCCCACCGCCCTCAATACTATCAGAACTGTTATTAGGCAAGCAGTCTCTCAGGAGCGTCGAATGGCTGCATCTCTCATCCGCCTCCATTTCCACGACTGTTTCGTTCAAGGTTGCGATGCGTCGATATTGCTTGATGATACTCCCTCTATGATCGGCGAACAAAATGCAGCGCCCAACCGAAACTCTGCAAGAGGTTATGGAGTGATACACAAAGCTAAGACTGAAGTTGAGAAGACATGTCCTGGCGTTGTATCTTGTGCAGACATTCTTGCTGTGGCGGCAAGAGATGCATCTTTTTCTGTTGGTGGTCCATCTTGGACGGTAAAGCTCGGAAGAAGAGACTCTACCACTGCAAGCAAAGCTCTGGCAGAGAGCGAGCTTCCACACTTTCAAGAAAGCCTTGATAGACTTATCTCCATTTTTGCAAATAAAGGCCTTAGTGCAAGAGACATGGTTGCACTATCAGGTTTTGCTAGCAATCTTCGTAGAAAGTGTCCCACATCGAGTGGGAATGGAAATTTGGCACCACTTGATTTGGTGACACCCAATTCCTTTGACAATAACTACTTTAAAAATCTTATTCAAAGGAAGGGATTGCTTGAGACAGATCAAGCTCTCTTTAATGGAGGATCGACAGATAGTATTGTCACGGAGTACAGTAAGAATCCAACTGCATTCAAATCTGACTTTGCAACTGCAATGATTAGAATGGGAGACATCGAACCGCTCACTGGTTTACAAGGACAAATAAGAAATATATGTGGAGCTGTGAACTAA 876 44.18 MAMARVAVSALMLLLLGMACDAQLSSTFYDQTCPTALNTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKTCPGVVSCADILAVAARDASFSVGGPSWTVKLGRRDSTTASKALAESELPHFQESLDRLISIFANKGLSARDMVALSGFASNLRRKCPTSSGNGNLAPLDLVTPNSFDNNYFKNLIQRKGLLETDQALFNGGSTDSIVTEYSKNPTAFKSDFATAMIRMGDIEPLTGLQGQIRNICGAVN 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24593541 24594726 + Maker00035272 Lcy7g1449 638281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1449 291 ProSiteProfiles Plant heme peroxidase family profile. 23 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lcy7g1449 291 CDD secretory_peroxidase 23 290 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy7g1449 291 PANTHER PEROXIDASE 72-RELATED 12 189 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 Gene3D - 27 160 - -
Lcy7g1449 291 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Plant peroxidase signature 265 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Lcy7g1449 291 SUPERFAMILY Heme-dependent peroxidases 23 291 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 Pfam Peroxidase 40 189 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Haem peroxidase superfamily signature 211 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1449 291 Gene3D Peroxidase, domain 2 191 270 - -
Lcy7g1449 291 Gene3D - 271 291 - -
Lcy7g1449 291 FunFam Peroxidase 27 170 - -
Lcy7g1449 291 Gene3D Peroxidase, domain 2 161 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1449 Lcy-Chr7:24593541 Lcy7g1485 Lcy-Chr7:25733852 1.06E-178 dispersed
Lcy7g1449 Lcy-Chr7:24593541 Lcy7g1452 Lcy-Chr7:24754636 5.67E-201 proximal
Lcy12g0864 Lcy-Chr12:11985169 Lcy7g1449 Lcy-Chr7:24593541 3.89E-64 wgd
Lcy7g1449 Lcy-Chr7:24593541 Lcy7g1962 Lcy-Chr7:46171679 7.84E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1449 K00430 - csv:116403992 496.123