Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1452 ATGGCAATGGCTCGAGTAGCTGTTTCTGCGTTGATGTTGTTGCTTTTGGGTATGGCTTGTGATGCCCAACTTTCTTCTACATTTTACGATCAAACTTGTCCCACCGCCCTCAATACTATCAGAACTGTTATTAGGCAAGCAGTCTCTCAGGAGCGTCGAATGGCTGCATCTCTCATCCGCCTCCATTTCCACGACTGTTTCGTTCAAGGTTGCGATGCGTCGATATTGCTTGATGATACTCCCTCTATGATCGGCGAACAAAATGCAGCGCCCAACCGAAACTCTGCAAGAGGTTATGGAGTGATACACAAAGCTAAGACTGAAGTTGAGAAGACATGTCCTGGCGTTGTATCTTGTGCAGACATTCTTGCTGTGGCGGCAAGAGATGCATCTTTTTCTGTTGGTGGTCCATCTTGGACGGTAAAGCTCGGAAGAAGAGACTCTACCACTGCAAGCAAAGCTCTGGCAGAGAGCGAGCTTCCACACTTTCAAGAAAGCCTTGATAGACTTATCTCCATTTTTGCAAATAAAGGCCTTAGTGCAAGAGACATGGTTGCACTATCAGGTTCTCACACCATAGGACAATCTCAATGTTTTCTTTTCCGTAATAGGATATACAACCAAAGTAACATTGATGCAGGTTTTGCTAGCAATCTTCGTAGAAAGTGTCCCACATCGAGTGGGAATGGAAATTTGGCACCACTTGATTTGGTGACACCCAATTCCTTTGACAATAACTACTTTAAAAATCTTATTCAAAGGAAGGGATTGCTTGAGACAGATCAAGCTCTCTTTAATGGAGGATCGACAGATAGTATTGTCACGGAGTACAGTAAGAATCCAACTGCATTCAAATCTGACTTTGCAACTGCAATGATTAGAATGGGAGACATCGAACCGCTCACTGGTTTACAAGGACAAATAAGAAATATATGTGGAGCTGTGAACTAA 951 43.53 MAMARVAVSALMLLLLGMACDAQLSSTFYDQTCPTALNTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKTCPGVVSCADILAVAARDASFSVGGPSWTVKLGRRDSTTASKALAESELPHFQESLDRLISIFANKGLSARDMVALSGSHTIGQSQCFLFRNRIYNQSNIDAGFASNLRRKCPTSSGNGNLAPLDLVTPNSFDNNYFKNLIQRKGLLETDQALFNGGSTDSIVTEYSKNPTAFKSDFATAMIRMGDIEPLTGLQGQIRNICGAVN 316
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 24754636 24756012 - Maker00035320 Lcy7g1452 638284
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1452 316 Gene3D - 27 312 - -
Lcy7g1452 316 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lcy7g1452 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Lcy7g1452 316 FunFam Peroxidase 161 295 - -
Lcy7g1452 316 Pfam Peroxidase 40 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Lcy7g1452 316 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 FunFam Peroxidase 27 170 - -
Lcy7g1452 316 Gene3D Peroxidase, domain 2 161 295 - -
Lcy7g1452 316 PANTHER PEROXIDASE 72-RELATED 12 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 ProSiteProfiles Plant heme peroxidase family profile. 23 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1452 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1452 Lcy-Chr7:24754636 Lcy7g1485 Lcy-Chr7:25733852 6.07E-203 dispersed
Lcy7g1449 Lcy-Chr7:24593541 Lcy7g1452 Lcy-Chr7:24754636 5.67E-201 proximal
Lcy7g1452 Lcy-Chr7:24754636 Lcy8g0730 Lcy-Chr8:26949638 5.15E-58 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1452 K00430 - csv:116403994 559.296