Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1485 ATGAAAATGGCAATGCCACAAGTAGTTGTCGTCGTGTTGATGTTGTTGCTTATAAGCTCAGCATGCAACGCCCAACTTTCCTCCACATTTTACGACCAAACTTGTCCCACTGCACTCACTACTATTAGAACTGTTATTAGACAAGCAATTTCTCAAGAACGCCGAATGGCTGCATCTCTCATTCGCCTACATTTCCACGACTGCTTTGTTCAGGGTTGTGATGCATCAATATTGCTTGACGATACTCCCTCTATGATTGGCGAACAAAATGCAGCACCCAATAGAAACTCCGCTCGAGGTTATGGGGTGATACACAAGGCTAAGACTGAAGTTGAGAAGATATGTCCTGGCGTTGTATCTTGTGCTGATATTCTTGCTGTGGCTGCTAGAGATGCATCTTTTGCTGTTGGTGGTCCATCTTGGACAGTAAAGCTTGGAAGACGAGACTCTACCACTGCAAGCAAAACTCTAGCGGAGAGCGAGCTTCCACATTTCCAAGCAGGTCTTGATAGACTTATTTCCATTTTTGCAAATAAAGGTCTTAGTACAAGAGATATGGTTGCACTATCAGGGTCTCATACTATTGGACAAGCTCAATGTTTTCTTTTCCGCAACAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCCAGCACTTGTCGCAGAAACTGCCCAACATCGAGTGGGAATGGTAATTTGGCACCACTTGATTTGGTGACACCCAATTCCTTTGACAATAACTACTTTAAAAATCTTGTTCAAAGGAAGGGTTTGCTAGAAACCGATCAAGTCCTCTTTAATGGAGGCTCAACAGATAATATTGTTACAGAGTACAGTAAAGATCCAACGACATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATCCAACCTCTCACTGGTTTACAAGGACAAATAAGAAATATATGTGGTGCTGTCAACTAA 957 42.01 MKMAMPQVVVVVLMLLLISSACNAQLSSTFYDQTCPTALTTIRTVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKICPGVVSCADILAVAARDASFAVGGPSWTVKLGRRDSTTASKTLAESELPHFQAGLDRLISIFANKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQSNIDAGFASTCRRNCPTSSGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIVTEYSKDPTTFKSDFAAAMIKMGDIQPLTGLQGQIRNICGAVN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25733852 25734989 + Maker00005489 Lcy7g1485 638317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1485 318 Pfam Peroxidase 42 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 FunFam Peroxidase 163 297 - -
Lcy7g1485 318 ProSiteProfiles Plant heme peroxidase family profile. 25 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lcy7g1485 318 Gene3D Peroxidase, domain 2 163 297 - -
Lcy7g1485 318 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lcy7g1485 318 Gene3D - 29 314 - -
Lcy7g1485 318 CDD secretory_peroxidase 25 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy7g1485 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lcy7g1485 318 PANTHER PEROXIDASE 72-RELATED 11 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 SUPERFAMILY Heme-dependent peroxidases 25 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 FunFam Peroxidase 29 178 - -
Lcy7g1485 318 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1485 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0029 Lcy-Chr11:297195 Lcy7g1485 Lcy-Chr7:25733852 3.82E-90 dispersed
Lcy7g1449 Lcy-Chr7:24593541 Lcy7g1485 Lcy-Chr7:25733852 1.06E-178 dispersed
Lcy7g1452 Lcy-Chr7:24754636 Lcy7g1485 Lcy-Chr7:25733852 6.07E-203 dispersed
Lcy7g1485 Lcy-Chr7:25733852 Lcy8g1698 Lcy-Chr8:43551438 1.07E-123 dispersed
Lcy12g0864 Lcy-Chr12:11985169 Lcy7g1485 Lcy-Chr7:25733852 1.09E-73 wgd
Lcy7g1485 Lcy-Chr7:25733852 Lcy7g1962 Lcy-Chr7:46171679 4.44E-34 wgd
Lcy7g1485 Lcy-Chr7:25733852 Lcy8g0730 Lcy-Chr8:26949638 1.95E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1485 K00430 - csv:116403994 575.474