Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1523 ATGGCCGCATCTTCTTCATCCGTTCCACTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCTCAGCAGCAACAGCAGCAACAACAACAACATTCCTCAGCTCCCTCAAATTCTTCGACTGCCCCTCCTCCTCCTCCAGCCCAGAAGAAAAAGAGGAACCAACCAGGAACTCCAAGCAAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACGCTAATGGCGACGAACAGATTCATATGCGAGAGCCCACATGCGTCCACCACGACCCTTCCAGGGCTCTCGGGGACTTGACGGGCATCAAAAAGCACTACTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCCAAGCGCTACGCCGTCCAGTCCGACTGGAAAGCCCACTCCAAAACCTGCGGCACCCGAGAGTACCGATGCGATTGCGGCACTCTCTTTTCCAGCTTTACTTTGTTCTCTTCTCGGTTGGCTGCTTCTATATGCACACTGTGCTTTTCCAGACGGGACAGTTTCATTACCCACAGAGCCTTCTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCTCCAAATTTAGGGTCAGCCATTGGAGGCCATTTATATGGAGCGAATAGCAATGTGGGCTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAACATCACCCAATCGGCCCACGACGTCCTCCGCCTCGGCGGAGGCCGCACCGGGCAATTCTCTCATCTCCTCCCTCCCTCCATTGGCTCGTCCTTCCGTCCCCCGCCGCAGCAGGCAATGCCGTCGTCGGCTGCGGCATTCTTCCTGACCGACCAGACTAACCAGAATAGCTTTCATGAAGATCATGGAAGCCAATCCCAACAAGGGTTGTTTGGAAACAAAGCCTTCCATGGGCTAATGCAATTCCCTGATATCCAAAGCCATACAAATAGTAACAACAACAGCAACAACCCTGCCACAAATCTCTTCAATTTGGGCTTCATTTCAAATCCCACTGGTGATACTACTACCAATATGAACAACACCAACACCAACACTACTAATACCAACAGCAATAGCAACAATTCCAACAACACCAACAATCTTCAGTCCTCTTTGCTAAATCAATTCAGTGGCTCAAACAACGGCAACAATGAAGGTGGCGCATCTAACATGTTTGCCGTTAACATAATGGGCGATCATATCAATTCCGGTGCAGTCCCATCTCTCTATAGCAATACGGCGGCAGTTGGCGGTGGCAGTGGAGCCATTCCGCACATGTCGGCGACGGCACTTCTCCAGAAGGCAGCACAATTGGGCTCAACAACGTCGAGTAGCAACACTACAGCGACATTGCTGAGAACGTTCGGAAGCTCCTCGACCTCAGGCGGGAAGGCATCCGACAGGACGCTTTTCCCGCCGAGCTACGGTGGAGTATTCGGCGAAAACGAGAGCAATCTCCAAGACCTGATGAACTCATTCACGACCGGGAGCTCGGCGGGCGGGCTCTTCGGTGGCGGGATGAGCTCGTTCGGCGGATTTGACGGTGGCAACCGAACCAACATGGAAACATTGGAGGATCCGAAGTTACAACAGAATCTTAGCACAGTCAGCATGGGAGGGACAGATAGGTTAACGAGAGACTTTTTAGGGGTTGGACAGATTGTAAGAAGTATGAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGTTATTCACAGAGAGAACACAAACAAGCGCCGCAAGGGATAGTTATGGAGGGAAATGAGAGCAATTCAGCGCCGTCAAGCCAAGCATTCGGTGGTGGAAATGGAAACTACCAGTGA 1833 51.66 MAASSSSVPLFGVREEAQMRPQQQQQQQQQHSSAPSNSSTAPPPPPAQKKKRNQPGTPSKSRCGGDCFESKDANGDEQIHMREPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSSFTLFSSRLAASICTLCFSRRDSFITHRAFCDALAQESARHPPNLGSAIGGHLYGANSNVGLTLSQVPQISSLQDHPNITQSAHDVLRLGGGRTGQFSHLLPPSIGSSFRPPPQQAMPSSAAAFFLTDQTNQNSFHEDHGSQSQQGLFGNKAFHGLMQFPDIQSHTNSNNNSNNPATNLFNLGFISNPTGDTTTNMNNTNTNTTNTNSNSNNSNNTNNLQSSLLNQFSGSNNGNNEGGASNMFAVNIMGDHINSGAVPSLYSNTAAVGGGSGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGGFDGGNRTNMETLEDPKLQQNLSTVSMGGTDRLTRDFLGVGQIVRSMSGGGGGGGGGGGGGYSQREHKQAPQGIVMEGNESNSAPSSQAFGGGNGNYQ 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27211414 27214678 - Maker00005490 Lcy7g1523 638355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1523 610 MobiDBLite consensus disorder prediction 587 610 - -
Lcy7g1523 610 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 82 109 - -
Lcy7g1523 610 MobiDBLite consensus disorder prediction 1 68 - -
Lcy7g1523 610 MobiDBLite consensus disorder prediction 338 383 - -
Lcy7g1523 610 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 113 137 - -
Lcy7g1523 610 MobiDBLite consensus disorder prediction 556 610 - -
Lcy7g1523 610 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 194 - -
Lcy7g1523 610 MobiDBLite consensus disorder prediction 18 37 - -
Lcy7g1523 610 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 83 560 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1523 Lcy-Chr7:27211414 Lcy9g1971 Lcy-Chr9:44649215 4.56E-46 dispersed
Lcy2g2121 Lcy-Chr2:42314412 Lcy7g1523 Lcy-Chr7:27211414 2.91E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20451 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1523 K25870 - csv:101219959 743.806