Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1603 ATGTCTCCCCCTCTTCCAGGAGCCTCCATTTTCTCCTCGATATGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCTTGGGAAGTTTTACATGGTCGGGTGAATACTCAGGATTGGATCCCAAGGTTCTCCTCCTTTGTGTTGCGGCTGCAGTGGTGTGTCCTTTGTAGGAGTCAGGAGAAGGACCTAGATCATTTGCTCTGGAATTGTCTGTTTGTTTGTTCTATTTGTAGTCAGTTCTTCAGGGTGTTTGGGGTTGTTTCGGCTTGTAACATTGGCTGCTCCACTATGTTTGAGGAAACCCTTTGTAGAATTTTTAGAGGGGTGGAGAAATCCATGAATGAGCTAGGGGAGACGATTGGATTTAACTCGTCTTTGTGGGCCTCAGCTTCTAAGCTTTTTTTGTCTGATGCTTTAGAGACCATAGGGAGATGGTTGAGGAGTTCCTCTTCCATCTGCCATTCAGAGGTAAGGGTTTTATGGCTTGCAGGGGTGTGTGCAGTTCTATGTGGTTTGTGGGGAGAGAGGAACAATAGGGCTTTTAGAGGATTAAAGAGGTCCCCGACTGATATGTGGGTCCTCACTAGATTCCATGTTTTTCTTTGGGCTTGGTTTCGAAGGCCTTTTCTAACCCTCGTCTTCGCTTGGATACCGTCTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTAAAAGAGATTGTGACATCTCCAGGTGTCATTTTAACATTACATCTGCTTTGTTGTGACTATGTGGTTTTTGCCTCGTTTTCTACAATTCTCTCATCTAGATGTGCAGATGGTAACAAGTACAAAGGTGGCATCTACGTGGTTTTCGAGTACATGGACCATGATTTGACCGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAATTTATTGTTTTTATTTTTTGTGCTGCAAGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACTTTGTGGTATAGACCTCCAGAATTGCTGTTCGGGTCAACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCGGGCAAGGATGAGGTAGGGGCTTTGCTGTGTAACTTTTATGCTTAA 1377 42.77 MSPPLPGASIFSSIWKVKIPKKVKFFAWEVLHGRVNTQDWIPRFSSFVLRLQWCVLCRSQEKDLDHLLWNCLFVCSICSQFFRVFGVVSACNIGCSTMFEETLCRIFRGVEKSMNELGETIGFNSSLWASASKLFLSDALETIGRWLRSSSSICHSEVRVLWLAGVCAVLCGLWGERNNRAFRGLKRSPTDMWVLTRFHVFLWAWFRRPFLTLVFAWIPSQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGVILTLHLLCCDYVVFASFSTILSSRCADGNKYKGGIYVVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQFIVFIFCAASSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLFGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEVGALLCNFYA 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31271690 31278473 + Maker00006055 Lcy7g1603 638435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1603 458 PANTHER CELL DIVISION PROTEIN KINASE 220 452 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy7g1603 458 Gene3D Transferase(Phosphotransferase) domain 1 321 452 - -
Lcy7g1603 458 Gene3D Phosphorylase Kinase; domain 1 223 291 - -
Lcy7g1603 458 ProSiteProfiles Protein kinase domain profile. 208 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1603 458 Pfam zinc-binding in reverse transcriptase 10 75 IPR026960 -
Lcy7g1603 458 Gene3D Phosphorylase Kinase; domain 1 309 320 - -
Lcy7g1603 458 SUPERFAMILY Protein kinase-like (PK-like) 220 456 IPR011009 -
Lcy7g1603 458 Pfam Protein kinase domain 220 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1603 Lcy-Chr7:31271690 Lcy8g1544 Lcy-Chr8:42067045 9.75E-62 dispersed
Lcy9g2355 Lcy-Chr9:47833661 Lcy7g1603 Lcy-Chr7:31271690 5.46E-28 dispersed
Lcy8g2188 Lcy-Chr8:47937030 Lcy7g1603 Lcy-Chr7:31271690 2.32E-136 transposed
Lcy1g2475 Lcy-Chr1:43296153 Lcy7g1603 Lcy-Chr7:31271690 2.18E-41 wgd
Lcy11g0531 Lcy-Chr11:12529857 Lcy7g1603 Lcy-Chr7:31271690 6.63E-37 wgd
Lcy11g1030 Lcy-Chr11:31391949 Lcy7g1603 Lcy-Chr7:31271690 1.56E-32 wgd
Lcy13g0741 Lcy-Chr13:11249957 Lcy7g1603 Lcy-Chr7:31271690 4.51E-29 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy7g1603 Lcy-Chr7:31271690 1.83E-58 wgd
Lcy2g2369 Lcy-Chr2:49848099 Lcy7g1603 Lcy-Chr7:31271690 1.07E-19 wgd
Lcy4g0788 Lcy-Chr4:9471163 Lcy7g1603 Lcy-Chr7:31271690 1.16E-31 wgd
Lcy4g1259 Lcy-Chr4:28897534 Lcy7g1603 Lcy-Chr7:31271690 4.57E-12 wgd
Lcy4g1498 Lcy-Chr4:37612811 Lcy7g1603 Lcy-Chr7:31271690 5.37E-53 wgd
Lcy5g1356 Lcy-Chr5:32393205 Lcy7g1603 Lcy-Chr7:31271690 2.91E-88 wgd
Lcy5g1097 Lcy-Chr5:22536248 Lcy7g1603 Lcy-Chr7:31271690 3.24E-32 wgd
Lcy7g1603 Lcy-Chr7:31271690 Lcy7g1607 Lcy-Chr7:31296850 1.14E-195 wgd
Lcy7g1603 Lcy-Chr7:31271690 Lcy8g0839 Lcy-Chr8:30343544 6.14E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66090 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1603 K08819 - csv:101220936 368.622