Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1607 ATGTCTCCCCCTCTTCCAGGAGCCTCCATTTTCTCCTCGATATGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCTTGGGAAGTCTTACATGGTCGGGTGAATACTCAGGATTGGATCCCAAGGTTCTCCTCCTTTGTGTTGCGGCTGCAGTGGTGTGTCCTTTGTAGGAGTCAGGAGAAGGACCTAGATCATTTGCTCTGGGATTGTCTGTTTGTTTGTTCTATTTGTAGTCAGTTCTTCAGGGTGTTTGGGGTTGTTTCGGCTTGTAACATTGGCTGCTCCTCTATGTTTGAGGAAACCCTTTGGTCTGATGCTTTAGAGACCATAGGGAGATGGTTGAGGAGTTCCTCTTCCATCTGCCATTTAGAGGTAGGGGTTTTATGGCTTGCAGGGAAGGCAGAGGAAGACATGGATCATATTCTTTGGAGTTGTGATCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTAAAAGAGATTGTGACATCTCCAGGTGTCATTTTAACATTACATCTGCTTTGTTGTGACTATGTGGTTTTTGCCTCGTTTTCTACAATTCTCTCATCTAGATGTGCAGATGGTAACAAGTACAAAGGTGGCATCTACGTGGTTTTCGAGTACATGGACCATGATTTGACCGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGGGATATAAAAGGCAATGAAAAAGTTATTATTCATGCATATCCCTTCTTTCTTATTCCTTTTTGCTGTTTAGTTTATTATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACTTTGTGA 1017 41.49 MSPPLPGASIFSSIWKVKIPKKVKFFAWEVLHGRVNTQDWIPRFSSFVLRLQWCVLCRSQEKDLDHLLWDCLFVCSICSQFFRVFGVVSACNIGCSSMFEETLWSDALETIGRWLRSSSSICHLEVGVLWLAGKAEEDMDHILWSCDQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGVILTLHLLCCDYVVFASFSTILSSRCADGNKYKGGIYVVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGNEKVIIHAYPFFLIPFCCLVYYFGLARSFSNDHNANLTNRVITL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31296850 31312389 - Maker00006010 Lcy7g1607 638439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1607 338 Gene3D Transferase(Phosphotransferase) domain 1 250 338 - -
Lcy7g1607 338 Pfam zinc-binding in reverse transcriptase 10 75 IPR026960 -
Lcy7g1607 338 Pfam Protein kinase domain 148 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1607 338 Gene3D Phosphorylase Kinase; domain 1 145 249 - -
Lcy7g1607 338 PANTHER CELL DIVISION PROTEIN KINASE 147 338 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy7g1607 338 ProSiteProfiles Protein kinase domain profile. 115 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1607 338 SUPERFAMILY Protein kinase-like (PK-like) 148 337 IPR011009 -
Lcy7g1607 338 SMART serkin_6 148 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1607 Lcy-Chr7:31296850 Lcy8g2188 Lcy-Chr8:47937030 4.67E-90 dispersed
Lcy5g1002 Lcy-Chr5:18753249 Lcy7g1607 Lcy-Chr7:31296850 3.46E-23 wgd
Lcy7g1607 Lcy-Chr7:31296850 Lcy7g1990 Lcy-Chr7:46642966 2.65E-23 wgd
Lcy7g1603 Lcy-Chr7:31271690 Lcy7g1607 Lcy-Chr7:31296850 1.14E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66091 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1607 K08819 - rcu:8289067 264.618