Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1665 ATGCTGCCGCCGGAAGACCCACTGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGCGATATTGAAACGAACAAGATTGTTGCGTTGAAGAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTATCTGGCAGTCTATACCTCGTATTTGAGTACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAATTCACTGAATCGCAGATAAAATGGTATATGCAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCCCAGGGAGTTTTGCACCGTGACATCAAGGGATCAAATCTTCTGATTGACAACAACGGTAATCTAAAGATTGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGCTCTGGTTGCATTCTTGCAGAATTATATGCTGGGAAGCCTATAATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAGTCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACCAGCGGTGTGTTTCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTACTTCTTGCGGTTGAACCTGATGGTCGTGGAACAGCTTCCTCTGCACTTCAAAGCGAGTTTTTTACTACAAAGCCTCTTCCTGCGGATCCCTCTACTTTGCCAAAATACCCACCAAGCAAGGAGTTTGATGCCAAGCTTCGAGACGAGGAAAACCGAAGAAGGAGAGCTCCTATCAGTGTAACACGTGAGCATGAAGCAGCTCGAAAGTTTCCCAGAGAATCTAAAGCCATTCCTGCTCCAGATGCAAATGCTGAGTTGCAGGCATCCATACAGAAGAAACAAGGGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATCCTGAAGAGGACGGAGGCTCTGGCTTTCGCATTGAGCCCCCCAAAGAAGCAACACAGGCGCAACCGATTGCATTGGGTTCTTCACGAAACATGAATGGGAATCAAGGTGATAATCCAAGAGGTTCTTCCGTTGGGGCAAAAGGTGCAGAACTTAGAAAACAGAGATCTTATATGCAGCATGGTGCTGGACAGTTATCCCGGTATTCCAATTCGGTTGCAGTCCGAGGTGGTTCACGATTTGGCTGTGGTGGAGAAAGTAGTACTAATTCACACTGGCCGGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGTGAATCTTCAGAAAAGCCTGAATGGTCTCACCATTTACTAGACAGGCCAAAGTCTTCATATAAGATAGATGGCCAGTCATCTGGAAAAGAGTCTGCTATGAATTGCGCTCTGAAAAAAAGAATTCACTATTCAGGACCCTTGATGCCTCCTGGTGGAAACCTCGAGGAAATGTTAAAAGAGCACGAGAAACAAATACAGCATGCCGTGCGCAAGGCTCGTATAGACAAAGCCAAGACAAAAAAGACATATGATGACAAAGGTCTATCAGAATCGTTACTTCACCATGTGAGAAACGGCAATTGA 1743 45.55 MLPPEDPLIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLVFEYMEHDLAGLAATPGIKFTESQIKWYMQQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYQRCVSETFKDFPSSALALLDVLLAVEPDGRGTASSALQSEFFTTKPLPADPSTLPKYPPSKEFDAKLRDEENRRRRAPISVTREHEAARKFPRESKAIPAPDANAELQASIQKKQGQQNPTSVSEKYNPEEDGGSGFRIEPPKEATQAQPIALGSSRNMNGNQGDNPRGSSVGAKGAELRKQRSYMQHGAGQLSRYSNSVAVRGGSRFGCGGESSTNSHWPEECFNVSYNHFNGGESSEKPEWSHHLLDRPKSSYKIDGQSSGKESAMNCALKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTYDDKGLSESLLHHVRNGN 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32912490 32924328 - Maker00027795 Lcy7g1665 638497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1665 580 MobiDBLite consensus disorder prediction 306 341 - -
Lcy7g1665 580 ProSiteProfiles Protein kinase domain profile. 3 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1665 580 PANTHER CELL DIVISION PROTEIN KINASE 9 287 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy7g1665 580 SMART serkin_6 8 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1665 580 FunFam probable serine/threonine-protein kinase At1g54610 5 85 - -
Lcy7g1665 580 Coils Coil 531 551 - -
Lcy7g1665 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy7g1665 580 Gene3D Transferase(Phosphotransferase) domain 1 86 326 - -
Lcy7g1665 580 FunFam probable serine/threonine-protein kinase At1g54610 86 327 - -
Lcy7g1665 580 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Lcy7g1665 580 Pfam Protein kinase domain 8 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy7g1665 580 SUPERFAMILY Protein kinase-like (PK-like) 8 293 IPR011009 -
Lcy7g1665 580 Gene3D Phosphorylase Kinase; domain 1 5 85 - -
Lcy7g1665 580 MobiDBLite consensus disorder prediction 394 414 - -
Lcy7g1665 580 MobiDBLite consensus disorder prediction 353 373 - -
Lcy7g1665 580 MobiDBLite consensus disorder prediction 289 422 - -
Lcy7g1665 580 CDD STKc_CDK9_like 9 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1665 Lcy-Chr7:32912490 Lcy8g1544 Lcy-Chr8:42067045 8.98E-166 dispersed
Lcy6g0602 Lcy-Chr6:5733147 Lcy7g1665 Lcy-Chr7:32912490 1.42E-216 transposed
Lcy9g0129 Lcy-Chr9:2818138 Lcy7g1665 Lcy-Chr7:32912490 1.07E-206 transposed
Lcy1g2133 Lcy-Chr1:29590317 Lcy7g1665 Lcy-Chr7:32912490 3.38E-32 wgd
Lcy10g0199 Lcy-Chr10:2891225 Lcy7g1665 Lcy-Chr7:32912490 2.17E-36 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy7g1665 Lcy-Chr7:32912490 3.98E-177 wgd
Lcy2g2369 Lcy-Chr2:49848099 Lcy7g1665 Lcy-Chr7:32912490 2.36E-39 wgd
Lcy7g1245 Lcy-Chr7:15588274 Lcy7g1665 Lcy-Chr7:32912490 2.33E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66092 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1665 - - - 0.0