Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1671 ATGTTTATCATCAAAATAAAAAGTGGACTTAGATGCCTTTGTTTCCTTTTTTTTTTTTTTAATCTTTTTTTTGTTGCAATTTTCACTAAAAAACCCTACTCAAAGTTCCCAACTTCATCGCCTCCCACTGCCTCTCGTGCTTCTGCAATTACGCTCCTCCTCGCAGATCTGAAGCTAGAGCGTGGAGCATTTCTCTGTCGAGCCATGGCGCTGGTCTTGCACGCAGGAAAGACGAATAAAAATGCTTTTAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAGTTGATACCAGAATTTGAGATGGGCGTATCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGAAAGGTCCCTGTTTTGGAAACGCCCGATGGCTCCATATTTGAGAGTAATGCGATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTATGGTTCATCTCTGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTGGAGATAGATTCTAATATGGTGACCTGGTTTAGACCTAGAATGGGGAGAGCTGATTATCTTCCTCCTGTTGAGGAAGCTGCAATTGCTGCATTAAAGAGGGCTTTGGGAGCTTTGAATACATACCTTGCTTCAAACACATACCTAGTTGGTCATTCTGTAACATTGGCTGACATCATCATGACTTGCAACCTGCTATTGGGGTTTACTAAGCTCATGACTAAGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGATACTTCTGGACCATGGTTAATCAACAAAACTTCAAAAAAATTCTGGGTGAGGTGAACCAGGCAGAATCAGTTCTACCACTTCAATCTGCAAAGAAACCTGATGAATCTGCTAAGCCAAAGCCCAAGGATGAGGTAAAGAAAGAACCCAAAAAGGAAGCTGAAAAGGAGAAGCCCAAGGCTGTAGTTGGTGATGGAGAGGATGAAGCACCAAAGCCAAAACCCAAAAACCCTCTTGATTTGTTGCCACCTAGTAAGATGATTCTGGATGAATGGAAGCGGCTATACTCGAATACCAAGACGAACTTCCGAGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGGTATTCTCTTTGGTTCTGTGATTACAAGTACGACAATGAGAATACTGTTTCGTTCGTGACTTTGAACAAGGTTAGTGGGTTTCTCCAGCGAATGGATCTTGCTCGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCAGAGGCTCCATTTAAAGTGAAGGGGTTGTGGCTTTTCCGTGGACAAGAGATCCCGCAATTCGTCCTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTCGACATATCGGACGAGGCACAGAAGGAACGCGTGAACCAAATGATTGAAGATCAGGAGCCTTTTGAAGGAGAGGATTTGTTGGATGCCAAATGCTTCAAGTGA 1473 43.25 MFIIKIKSGLRCLCFLFFFFNLFFVAIFTKKPYSKFPTSSPPTASRASAITLLLADLKLERGAFLCRAMALVLHAGKTNKNAFKALIAAEYNGVEVKLIPEFEMGVSNKTPEFIKMNPIGKVPVLETPDGSIFESNAIARYVARLKADSPLYGSSLIDYGHIEQWIDFASLEIDSNMVTWFRPRMGRADYLPPVEEAAIAALKRALGALNTYLASNTYLVGHSVTLADIIMTCNLLLGFTKLMTKSFTSEFPHVERYFWTMVNQQNFKKILGEVNQAESVLPLQSAKKPDESAKPKPKDEVKKEPKKEAEKEKPKAVVGDGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYDNENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEDLLDAKCFK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33203618 33207181 + Maker00027752 Lcy7g1671 638503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1671 490 SUPERFAMILY eEF1-gamma domain 330 490 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy7g1671 490 MobiDBLite consensus disorder prediction 289 330 - -
Lcy7g1671 490 FunFam Elongation factor 1-gamma 1 330 490 - -
Lcy7g1671 490 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 330 490 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy7g1671 490 CDD GST_C_EF1Bgamma_like 158 278 - -
Lcy7g1671 490 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 155 283 IPR010987 -
Lcy7g1671 490 FunFam Elongation factor 1B gamma 69 142 - -
Lcy7g1671 490 Pfam Glutathione S-transferase, C-terminal domain 192 264 IPR004046 -
Lcy7g1671 490 Pfam Elongation factor 1 gamma, conserved domain 329 437 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy7g1671 490 SFLD Glutathione Transferase (cytosolic) 72 261 IPR040079 -
Lcy7g1671 490 SUPERFAMILY Thioredoxin-like 68 153 IPR036249 -
Lcy7g1671 490 Gene3D - 148 285 - -
Lcy7g1671 490 Gene3D Glutaredoxin 68 142 - -
Lcy7g1671 490 FunFam Elongation factor 1 gamma 148 284 - -
Lcy7g1671 490 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 330 490 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy7g1671 490 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 69 490 IPR044628 GO:0004364(InterPro)
Lcy7g1671 490 SMART EF1G_2 329 437 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy7g1671 490 SUPERFAMILY GST C-terminal domain-like 141 278 IPR036282 -
Lcy7g1671 490 CDD GST_N_EF1Bgamma 71 145 - -
Lcy7g1671 490 SFLD Main (cytGST) 72 261 - -
Lcy7g1671 490 MobiDBLite consensus disorder prediction 282 337 - -
Lcy7g1671 490 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 69 150 IPR004045 -
Lcy7g1671 490 Pfam Glutathione S-transferase, N-terminal domain 77 144 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1159 Lcy-Chr6:13418031 Lcy7g1671 Lcy-Chr7:33203618 1.89E-223 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1671 K03233 - vvi:100246571 693.345