Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1690 ATGAGGCAAGTCTCATTTACTATTGCATATGGAAAATTCACAGATGAAGAGTTCCAAAAATTTACAGTAGAGTCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGTCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGTTTCTCAAGTTTGTTGAGAAGACAACTCCAGTTGTTGTCTATACTTCTGGAAAAGGTTCATCGGCTGCTGGTCTTACAGCTTCACGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGTGGTGTTATCTGCATTGATGGGTTTGACAAAATGAGATCAGAAGATAGAGTTGCAATTCATGAAGCCATGGAACAACAGACAATATCAATTGCTAAAGCAGGAATAACAACGACGGCACAGGATAACATTGATTTGCAGACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTGCAGTCAAGATAAGCTGAAAGATATTGGTCAAGCGATACGTTGTGTACACTTTATCAAGACGAGTGTGACACAAATATTGCCTGACTTGAAGTTGGGTTTAAATGATAAGATTGGCCTTGAGAAAGTGTCACAGTTGAAGTCCCGTTCAACTAAAAGTGTTTTCAAAGCGCAAGGCGCACCTCAAGGCGACAAGCCCCTTGATCGCCTCAAGGCGAGAGGCGACAAAAAGGCGACGCCCGAGTGA 744 41.13 MRQVSFTIAYGKFTDEEFQKFTVESDVYKSICSKIAPSIFGHDDVKKVVACLLFGGSRKFLKFVEKTTPVVVYTSGKGSSAAGLTASREFYLEGGAMVLADGGVICIDGFDKMRSEDRVAIHEAMEQQTISIAKAGITTTAQDNIDLQTTILSRFDLIFIVKDIRMCSQDKLKDIGQAIRCVHFIKTSVTQILPDLKLGLNDKIGLEKVSQLKSRSTKSVFKAQGAPQGDKPLDRLKARGDKKATPE 247
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 34052896 34057788 + Maker00027764 Lcy7g1690 638522
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1690 247 MobiDBLite consensus disorder prediction 232 247 - -
Lcy7g1690 247 Gene3D - 12 143 IPR027417 -
Lcy7g1690 247 SMART mcm 1 218 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy7g1690 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 164 IPR027417 -
Lcy7g1690 247 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 14 60 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Lcy7g1690 247 ProSiteProfiles MCM family domain profile. 27 163 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy7g1690 247 PRINTS Mini-chromosome maintenance (MCM) protein family signature 95 109 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy7g1690 247 PRINTS Mini-chromosome maintenance (MCM) protein family signature 123 136 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy7g1690 247 MobiDBLite consensus disorder prediction 218 247 - -
Lcy7g1690 247 Pfam MCM P-loop domain 59 140 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1003 Lcy-Chr5:18784881 Lcy7g1690 Lcy-Chr7:34052896 1.48E-127 dispersed
Lcy7g1690 Lcy-Chr7:34052896 Lcy6g1403 Lcy-Chr6:20750974 1.14E-06 dispersed
Lcy13g0477 Lcy-Chr13:5684217 Lcy7g1690 Lcy-Chr7:34052896 2.83E-09 transposed
Lcy11g0915 Lcy-Chr11:27405421 Lcy7g1690 Lcy-Chr7:34052896 7.90E-36 wgd
Lcy7g1526 Lcy-Chr7:27398340 Lcy7g1690 Lcy-Chr7:34052896 1.09E-07 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1690 K02209 - csv:101211822 254.218