Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g1690 | ATGAGGCAAGTCTCATTTACTATTGCATATGGAAAATTCACAGATGAAGAGTTCCAAAAATTTACAGTAGAGTCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGTCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGTTTCTCAAGTTTGTTGAGAAGACAACTCCAGTTGTTGTCTATACTTCTGGAAAAGGTTCATCGGCTGCTGGTCTTACAGCTTCACGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGTGGTGTTATCTGCATTGATGGGTTTGACAAAATGAGATCAGAAGATAGAGTTGCAATTCATGAAGCCATGGAACAACAGACAATATCAATTGCTAAAGCAGGAATAACAACGACGGCACAGGATAACATTGATTTGCAGACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTGCAGTCAAGATAAGCTGAAAGATATTGGTCAAGCGATACGTTGTGTACACTTTATCAAGACGAGTGTGACACAAATATTGCCTGACTTGAAGTTGGGTTTAAATGATAAGATTGGCCTTGAGAAAGTGTCACAGTTGAAGTCCCGTTCAACTAAAAGTGTTTTCAAAGCGCAAGGCGCACCTCAAGGCGACAAGCCCCTTGATCGCCTCAAGGCGAGAGGCGACAAAAAGGCGACGCCCGAGTGA | 744 | 41.13 | MRQVSFTIAYGKFTDEEFQKFTVESDVYKSICSKIAPSIFGHDDVKKVVACLLFGGSRKFLKFVEKTTPVVVYTSGKGSSAAGLTASREFYLEGGAMVLADGGVICIDGFDKMRSEDRVAIHEAMEQQTISIAKAGITTTAQDNIDLQTTILSRFDLIFIVKDIRMCSQDKLKDIGQAIRCVHFIKTSVTQILPDLKLGLNDKIGLEKVSQLKSRSTKSVFKAQGAPQGDKPLDRLKARGDKKATPE | 247 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 34052896 | 34057788 | + | Maker00027764 | Lcy7g1690 | 638522 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g1690 | 247 | MobiDBLite | consensus disorder prediction | 232 | 247 | - | - | |
| Lcy7g1690 | 247 | Gene3D | - | 12 | 143 | IPR027417 | - | |
| Lcy7g1690 | 247 | SMART | mcm | 1 | 218 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy7g1690 | 247 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 164 | IPR027417 | - | |
| Lcy7g1690 | 247 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 14 | 60 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| Lcy7g1690 | 247 | ProSiteProfiles | MCM family domain profile. | 27 | 163 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy7g1690 | 247 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 95 | 109 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy7g1690 | 247 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 123 | 136 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy7g1690 | 247 | MobiDBLite | consensus disorder prediction | 218 | 247 | - | - | |
| Lcy7g1690 | 247 | Pfam | MCM P-loop domain | 59 | 140 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g1003 | Lcy-Chr5:18784881 | Lcy7g1690 | Lcy-Chr7:34052896 | 1.48E-127 | dispersed | |
| Lcy7g1690 | Lcy-Chr7:34052896 | Lcy6g1403 | Lcy-Chr6:20750974 | 1.14E-06 | dispersed | |
| Lcy13g0477 | Lcy-Chr13:5684217 | Lcy7g1690 | Lcy-Chr7:34052896 | 2.83E-09 | transposed | |
| Lcy11g0915 | Lcy-Chr11:27405421 | Lcy7g1690 | Lcy-Chr7:34052896 | 7.90E-36 | wgd | |
| Lcy7g1526 | Lcy-Chr7:27398340 | Lcy7g1690 | Lcy-Chr7:34052896 | 1.09E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy7g1690 | K02209 | - | csv:101211822 | 254.218 |