Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1941 ATGTCCATGTTAGGGTTTTTGCATGGGTGGTGGTTGCTCGTAGGAGGGTGGGTTAACCTTAACACTATTGTTGTCAAGGAGAGACCCTGGTCCTCTTCCATGTTTCTTTTGTTTCGATGGGGTGTGTTCTTTGCCAGCAAAGGCCACAAGACTTCCTCCTTGGGGCCATCTTCCGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCACTTGTCACTCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGCTCTTCGGGCGGAACCCGACACAGATGAAGTTTATGCTCAGATAACTTTGTTACCGGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACGAGATGTAACGTCCACTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACCGACTTACATGGGAATCAGTGGCATTTTAGGCACATTTTCCGAGTCTATCAACTCTATATGGGTTTCTGCCTTCAAGAAGAGGCCTTTGGTAAGCACTTGGAATTTGGGAACACTTCAGGTCCTGAGTTCAAAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTGGGAGATAATGCGTCGCCTGGGTGGGCTAATTCTGAGTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAACTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACACAGAGGAACAAGCGTCCGCGGCCAGCTGTTTTGCCTTCACCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTTTCATATACTGAGCCACAGCGTGGAAGGGGCCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGGGAATAGTTCTCTTGGTGCTGTTTCCAGCAACACCTATTGGTCTAATACCAATAGGGTGGAAAATGTTATGGACACTTCATGTCATGGAGCTAACAGGGAACCCGTTGAAAAGAAACAGAACACTAGGAACGGATGCAGGCTCTTCGGGATCCAGCTTCTTGGAAATTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCGGTTCCACCTGTAGACACGGAATTTGACCAGCATTCTGAACCGTCAAACATTCACCGATCAGATATTCCCTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCTCTAGAGTCTCAAAGCAAACAAATTCGTAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGAAGGGCCGTAGATCTAACACGGTTTAATCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGACATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGTAGCATGGTAAGGAAGATATTCATCTACACAACAGAAGAAGTAAAGAGACTGTCGCCCAAGATTAAACTCCCACTTGGTGGAGAGACGAAGCTCAGCAAACCAGATTCCGATACCATTGCCAACCACACGGAGGATCAATCATCCATCGTGGGATCAGATTGCTGA 1983 46.14 MSMLGFLHGWWLLVGGWVNLNTIVVKERPWSSSMFLLFRWGVFFASKGHKTSSLGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVALRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRVYQLYMGFCLQEEAFGKHLEFGNTSGPEFKTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPAVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRGLYSSPKFSTAASNSLGFNGNSSLGAVSSNTYWSNTNRVENVMDTSCHGANREPVEKKQNTRNGCRLFGIQLLGNSNVEEASPVSTPKMVGEDRPVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPLESQSKQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLSKPDSDTIANHTEDQSSIVGSDC 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45650767 45657839 - Maker00034740 Lcy7g1941 638773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1941 660 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 60 223 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy7g1941 660 SUPERFAMILY DNA-binding pseudobarrel domain 155 228 IPR015300 -
Lcy7g1941 660 MobiDBLite consensus disorder prediction 634 660 - -
Lcy7g1941 660 FunFam Auxin response factor 530 624 - -
Lcy7g1941 660 Pfam AUX/IAA family 582 626 IPR033389 -
Lcy7g1941 660 Pfam AUX/IAA family 532 571 IPR033389 -
Lcy7g1941 660 CDD B3_DNA 164 232 IPR003340 GO:0003677(InterPro)
Lcy7g1941 660 Pfam Auxin response factor 253 318 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy7g1941 660 Gene3D - 163 274 IPR015300 -
Lcy7g1941 660 SUPERFAMILY CAD & PB1 domains 537 612 - -
Lcy7g1941 660 MobiDBLite consensus disorder prediction 344 375 - -
Lcy7g1941 660 ProSiteProfiles PB1 domain profile. 535 628 IPR053793 -
Lcy7g1941 660 FunFam Auxin response factor 273 345 - -
Lcy7g1941 660 Gene3D - 530 624 - -
Lcy7g1941 660 Gene3D - 275 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0845 Lcy-Chr4:11328680 Lcy7g1941 Lcy-Chr7:45650767 4.78E-144 dispersed
Lcy6g0783 Lcy-Chr6:7804027 Lcy7g1941 Lcy-Chr7:45650767 9.14E-147 dispersed
Lcy7g1941 Lcy-Chr7:45650767 Lcy8g1889 Lcy-Chr8:45166309 1.30E-95 dispersed
Lcy4g1586 Lcy-Chr4:39949846 Lcy7g1941 Lcy-Chr7:45650767 4.12E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1941 K14486 - csv:101204612 771.926