Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1962 ATGGCCGGCGGCCCTTACTACACCGTCTTCCTTGGCCGCAAGGATGCGAAAGTTTCCAGAGCCTCCGCCATTGAAGGCACGCTCCCCAGACCCTCCATGTCCGTCTCTGAGATCATCGGAATCTTCGCCGCCAGAGGATTTTCCGTTCAGGAAATGGTGGCGCTAAGCGGCGCACATTCAATTGGCTTCTCGCATTGCAAGGAGTTCACCTCTGGGATCTTCAATTACAGTAAATCCCCGCCCTACGACAGCCATTACAACCCTAGATTCGCATTAGGTTTACAGAGAGCGTGCGCCGATTACCAGAAGAATCCGACTCTGTCCGTTTTCAACGACATAATGACGCCAAACAAGTTCGACAACATGTATTTCAAGAATCTGCAGAAGGGGTTAGGGCTTCTGAAATCCGATGGCGGATTTTACAGCGATTCAAGAACACGGCTGTGGGTGGAGAAATACGCAGCAGATGAGAGCGCCTTCTTCGAGGCGTTTTCTCGAGCAATGGTGACGCTCGGTGGCTATGGCGTCAAAGTGGGGAACGAAGGAGAGATTAGACGCAGGTGCGATGCCTTCAATTGA 579 52.16 MAGGPYYTVFLGRKDAKVSRASAIEGTLPRPSMSVSEIIGIFAARGFSVQEMVALSGAHSIGFSHCKEFTSGIFNYSKSPPYDSHYNPRFALGLQRACADYQKNPTLSVFNDIMTPNKFDNMYFKNLQKGLGLLKSDGGFYSDSRTRLWVEKYAADESAFFEAFSRAMVTLGGYGVKVGNEGEIRRRCDAFN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46171679 46172257 - Maker00034653 Lcy7g1962 638794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1962 192 ProSitePatterns Peroxidases proximal heme-ligand signature. 51 61 IPR019793 -
Lcy7g1962 192 Gene3D Peroxidase, domain 2 29 171 - -
Lcy7g1962 192 FunFam Peroxidase 29 171 - -
Lcy7g1962 192 ProSiteProfiles Plant heme peroxidase family profile. 1 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 Gene3D - 1 192 - -
Lcy7g1962 192 PRINTS Plant peroxidase signature 110 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Plant peroxidase signature 3 18 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Plant peroxidase signature 126 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Plant peroxidase signature 50 62 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Plant peroxidase signature 166 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 SUPERFAMILY Heme-dependent peroxidases 2 192 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Haem peroxidase superfamily signature 112 127 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Haem peroxidase superfamily signature 51 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PRINTS Haem peroxidase superfamily signature 3 15 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 Pfam Peroxidase 1 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy7g1962 192 PANTHER - 1 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1952 Lcy-Chr10:43564455 Lcy7g1962 Lcy-Chr7:46171679 1.14E-138 dispersed
Lcy2g0627 Lcy-Chr2:5376375 Lcy7g1962 Lcy-Chr7:46171679 3.02E-70 dispersed
Lcy5g2246 Lcy-Chr5:45418386 Lcy7g1962 Lcy-Chr7:46171679 3.61E-69 dispersed
Lcy7g1962 Lcy-Chr7:46171679 Lcy8g0730 Lcy-Chr8:26949638 2.27E-54 dispersed
Lcy10g0302 Lcy-Chr10:5387420 Lcy7g1962 Lcy-Chr7:46171679 3.16E-89 wgd
Lcy10g1234 Lcy-Chr10:35019081 Lcy7g1962 Lcy-Chr7:46171679 2.90E-11 wgd
Lcy7g1449 Lcy-Chr7:24593541 Lcy7g1962 Lcy-Chr7:46171679 7.84E-27 wgd
Lcy7g1485 Lcy-Chr7:25733852 Lcy7g1962 Lcy-Chr7:46171679 4.44E-34 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1962 K00430 - csv:105435603 339.347