Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1983 ATGACAGATCAAGTGTCGGATAGTGTTTCCAGAGTTCTGAGTTTGTTTTTGTTTGTTGTTTTAGCTTCGATTCTGGCCAATGTGGCTTTTGTTAGCGCTAAATCAACTATAGAGCCGTGCTCGAACTCTGATTCTTGCAATGCTCTGCTCGGTTACACTCTCTATACCGACCTGAAGGTTTCTGAAGTTGCTTCGCTCTTTCAAGTCGACCCCATTTCGATTCTTACCGCCAACGCCATAGATGTTTCATACCCTGATGTTGAAAACCACATTCTGCCTTCGCAGCTCTTCATTAAAATCCCCATTTCTTGTTCTTGCGTTGATGGGATTCGCAAATCGGTGTCCACTCGGTACAAGACTCGCCCATCTGACACTCTCTCGTCGATTGCTGATTCTATCTATGCTGGTTTGGTCTCGTCGGATCAAATTCGTGAGGCGAATTCCATTTCGGACCCCTCTGTTCTTGATGTTGGACAGACCCTTGTTGTGCCGCTTCCTTGTACTTGCTTTAATGGGACTGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACCTGAAGATACTTTAGCCGGGATTGCGTCTAGATATTCGACCACTATCACTGACTTGATGGATGTTAATGCTATGGGAAACCCGGCCATTAAGGCTGGTGATATTTTGGCCGTCCCCTTGCCTGCCTGTGCGTCTAAGTTTCCGAGATATGCCTCCGACTTTGGCTTGATTGTCCCCAATGGAAGCTATGCGATAACCGCGAGTCATTGCGTGCAATGTAGCTGTGGACCAGGGAACCTCAATATGTACTGCATGCCTGCTCCCTTTGCCGTTTCTTGTTCGAGTATGCAATGCAGAGGCAGCAATCTAATGCTTGGGAACTCCACTGCACAGCAGAGTAGTGCAGGTTGCAATGTTACATCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATATTGACGACGTTGTCTTCGAATCTTCAGCCTCGATGCCCAGGGCCACAACAATTCCCTCCTCTTAAAGCCCCGCCTACTACAGTAATCAGAGATTCAAATTTTGCACCTGCACCTGCTCCTCAATTTGATGGCACTGGATCACCTGCACCTGGATTGGGATTGATCCCTTCAACAACTGGTTCTCTCCCCGGATTCCCGCCCGCCAGTGGCCCCGTTGGTAGTACTTCTGGTTTGAATTCTGCACCTTCTGCTGCTTCCTCATTGGTGTATCCATTAGCGAGTATCTCTGTTGCCTTTCTGTTATTTATCATCGCCAACTTCTTTACATCATTTTCATTGTAA 1299 46.81 MTDQVSDSVSRVLSLFLFVVLASILANVAFVSAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDVSYPDVENHILPSQLFIKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSVLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQPEDTLAGIASRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFPRYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRGSNLMLGNSTAQQSSAGCNVTSCSYGGFVNGTILTTLSSNLQPRCPGPQQFPPLKAPPTTVIRDSNFAPAPAPQFDGTGSPAPGLGLIPSTTGSLPGFPPASGPVGSTSGLNSAPSAASSLVYPLASISVAFLLFIIANFFTSFSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46402852 46425367 + Maker00034657 Lcy7g1983 638815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1983 432 SUPERFAMILY LysM domain 116 165 IPR036779 -
Lcy7g1983 432 SUPERFAMILY LysM domain 182 227 IPR036779 -
Lcy7g1983 432 Gene3D LysM domain 182 226 IPR036779 -
Lcy7g1983 432 Gene3D LysM domain 112 173 IPR036779 -
Lcy7g1983 432 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Lcy7g1983 432 CDD LysM 183 225 IPR018392 -
Lcy7g1983 432 SMART LysM_2 183 226 IPR018392 -
Lcy7g1983 432 SMART LysM_2 117 164 IPR018392 -
Lcy7g1983 432 CDD LysM 116 163 IPR018392 -
Lcy7g1983 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 333 - -
Lcy7g1983 432 Pfam LysM domain 118 164 IPR018392 -
Lcy7g1983 432 Pfam LysM domain 184 226 IPR018392 -
Lcy7g1983 432 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1983 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0351 Lcy-Chr4:4447084 Lcy7g1983 Lcy-Chr7:46402852 2.47E-50 transposed
Lcy8g1005 Lcy-Chr8:34984799 Lcy7g1983 Lcy-Chr7:46402852 1.39E-22 transposed
Lcy9g0042 Lcy-Chr9:806389 Lcy7g1983 Lcy-Chr7:46402852 6.44E-49 transposed
Lcy10g1221 Lcy-Chr10:34848468 Lcy7g1983 Lcy-Chr7:46402852 6.54E-266 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g1983 . 15 395 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 74.2 3.1e-159 558.9
Lcy10g1221 . 15 381 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.1 2.0e-142 503.1
Lcy7g1983 . 15 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 61.9 1.6e-139 493.4
Lcy10g1221 . 15 332 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 68.2 2.5e-124 443.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37