Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy7g1989 | ATGGAGCTCACCACTCAAGATCCTCCTATTCCCATCCCCATCCCCATCCCTTTAAATAGTCGCTACGGCGGCCACGACCACGACCACGTCATCCACCACCACCATCATGACCCTTCCGCCACCCGCAACCACATCATTGCTGCGGTCAACGGCAGCAGCCCACTCCCAACCTCCCAGATGGAAGCTGATCTCCATCACCATCATGCCAACAACAATAACAACAACAGCAACAACAATAAGAAGCACGTCAAATACAAAGAGTGTCTCAAGAACCACGCAGCCTCCATGGGTGGCAATGCCACCGATGGTTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACAGAAACTTCCACCGCAAAGAGATCGAGGGGGAGCCCTACGATTGGCTCCACCACCCCCGCCTCGGTCGCAAGCTCCTCGTCGGTGGGAAGAACATGATAGCAGCACCAGAGGCCGCTGCGTTTGCGTACCCAACCGCAACGGGGGCAACGTTCATATCATCCAGAGCAGCAGCAGCAGCAGCGCAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGTGGTGGGCAGTCGGAGTCGGAGGAGCAGGAGGAGGCGGGCGGGGCAAGGGCATATTCGGGGCAAATGATGATGAATAAGAAGCGGTTTCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGAAACTATTTCTCCTTCCCATTCTCCTACTCCCTTAAATTAA | 915 | 53.66 | MELTTQDPPIPIPIPIPLNSRYGGHDHDHVIHHHHHDPSATRNHIIAAVNGSSPLPTSQMEADLHHHHANNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAAPEAAAFAYPTATGATFISSRAAAAAAQPHHMIMSYNMLGGGGGQSESEEQEEAGGARAYSGQMMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKETISPSHSPTPLN | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 46615929 | 46616843 | - | Maker00034660 | Lcy7g1989 | 638821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy7g1989 | 304 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 65 | 287 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Lcy7g1989 | 304 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 85 | 134 | IPR006456 | - | |
Lcy7g1989 | 304 | Pfam | ZF-HD protein dimerisation region | 83 | 135 | IPR006456 | - | |
Lcy7g1989 | 304 | SUPERFAMILY | Homeodomain-like | 221 | 290 | IPR009057 | - | |
Lcy7g1989 | 304 | Gene3D | - | 211 | 291 | - | - | |
Lcy7g1989 | 304 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 84 | 135 | IPR006456 | - | |
Lcy7g1989 | 304 | FunFam | Zinc-finger homeodomain protein 2 | 217 | 290 | - | - | |
Lcy7g1989 | 304 | NCBIfam | homeobox domain, ZF-HD class | 229 | 285 | IPR006455 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2356 | Lcy-Chr5:46391007 | Lcy7g1989 | Lcy-Chr7:46615929 | 5.22E-35 | dispersed | |
Lcy5g2545 | Lcy-Chr5:48212247 | Lcy7g1989 | Lcy-Chr7:46615929 | 9.76E-23 | dispersed | |
Lcy6g0911 | Lcy-Chr6:9251096 | Lcy7g1989 | Lcy-Chr7:46615929 | 4.80E-20 | dispersed | |
Lcy6g1056 | Lcy-Chr6:11439449 | Lcy7g1989 | Lcy-Chr7:46615929 | 2.70E-44 | dispersed | |
Lcy7g0280 | Lcy-Chr7:2431270 | Lcy7g1989 | Lcy-Chr7:46615929 | 4.36E-32 | dispersed | |
Lcy10g0467 | Lcy-Chr10:11126686 | Lcy7g1989 | Lcy-Chr7:46615929 | 2.49E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20458 | None | None | None | None | Lcy | TF |
Pathway information
