Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1989 ATGGAGCTCACCACTCAAGATCCTCCTATTCCCATCCCCATCCCCATCCCTTTAAATAGTCGCTACGGCGGCCACGACCACGACCACGTCATCCACCACCACCATCATGACCCTTCCGCCACCCGCAACCACATCATTGCTGCGGTCAACGGCAGCAGCCCACTCCCAACCTCCCAGATGGAAGCTGATCTCCATCACCATCATGCCAACAACAATAACAACAACAGCAACAACAATAAGAAGCACGTCAAATACAAAGAGTGTCTCAAGAACCACGCAGCCTCCATGGGTGGCAATGCCACCGATGGTTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACAGAAACTTCCACCGCAAAGAGATCGAGGGGGAGCCCTACGATTGGCTCCACCACCCCCGCCTCGGTCGCAAGCTCCTCGTCGGTGGGAAGAACATGATAGCAGCACCAGAGGCCGCTGCGTTTGCGTACCCAACCGCAACGGGGGCAACGTTCATATCATCCAGAGCAGCAGCAGCAGCAGCGCAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGTGGTGGGCAGTCGGAGTCGGAGGAGCAGGAGGAGGCGGGCGGGGCAAGGGCATATTCGGGGCAAATGATGATGAATAAGAAGCGGTTTCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGAAACTATTTCTCCTTCCCATTCTCCTACTCCCTTAAATTAA 915 53.66 MELTTQDPPIPIPIPIPLNSRYGGHDHDHVIHHHHHDPSATRNHIIAAVNGSSPLPTSQMEADLHHHHANNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAAPEAAAFAYPTATGATFISSRAAAAAAQPHHMIMSYNMLGGGGGQSESEEQEEAGGARAYSGQMMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKETISPSHSPTPLN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46615929 46616843 - Maker00034660 Lcy7g1989 638821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1989 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 65 287 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy7g1989 304 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Lcy7g1989 304 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Lcy7g1989 304 SUPERFAMILY Homeodomain-like 221 290 IPR009057 -
Lcy7g1989 304 Gene3D - 211 291 - -
Lcy7g1989 304 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Lcy7g1989 304 FunFam Zinc-finger homeodomain protein 2 217 290 - -
Lcy7g1989 304 NCBIfam homeobox domain, ZF-HD class 229 285 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2356 Lcy-Chr5:46391007 Lcy7g1989 Lcy-Chr7:46615929 5.22E-35 dispersed
Lcy5g2545 Lcy-Chr5:48212247 Lcy7g1989 Lcy-Chr7:46615929 9.76E-23 dispersed
Lcy6g0911 Lcy-Chr6:9251096 Lcy7g1989 Lcy-Chr7:46615929 4.80E-20 dispersed
Lcy6g1056 Lcy-Chr6:11439449 Lcy7g1989 Lcy-Chr7:46615929 2.70E-44 dispersed
Lcy7g0280 Lcy-Chr7:2431270 Lcy7g1989 Lcy-Chr7:46615929 4.36E-32 dispersed
Lcy10g0467 Lcy-Chr10:11126686 Lcy7g1989 Lcy-Chr7:46615929 2.49E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20458 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1989 - - - 0.0