Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g1989 ATGGAGCTCACCACTCAAGATCCTCCTATTCCCATCCCCATCCCCATCCCTTTAAATAGTCGCTACGGCGGCCACGACCACGACCACGTCATCCACCACCACCATCATGACCCTTCCGCCACCCGCAACCACATCATTGCTGCGGTCAACGGCAGCAGCCCACTCCCAACCTCCCAGATGGAAGCTGATCTCCATCACCATCATGCCAACAACAATAACAACAACAGCAACAACAATAAGAAGCACGTCAAATACAAAGAGTGTCTCAAGAACCACGCAGCCTCCATGGGTGGCAATGCCACCGATGGTTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACAGAAACTTCCACCGCAAAGAGATCGAGGGGGAGCCCTACGATTGGCTCCACCACCCCCGCCTCGGTCGCAAGCTCCTCGTCGGTGGGAAGAACATGATAGCAGCACCAGAGGCCGCTGCGTTTGCGTACCCAACCGCAACGGGGGCAACGTTCATATCATCCAGAGCAGCAGCAGCAGCAGCGCAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGTGGTGGGCAGTCGGAGTCGGAGGAGCAGGAGGAGGCGGGCGGGGCAAGGGCATATTCGGGGCAAATGATGATGAATAAGAAGCGGTTTCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGAAACTATTTCTCCTTCCCATTCTCCTACTCCCTTAAATTAA 915 53.66 MELTTQDPPIPIPIPIPLNSRYGGHDHDHVIHHHHHDPSATRNHIIAAVNGSSPLPTSQMEADLHHHHANNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAAPEAAAFAYPTATGATFISSRAAAAAAQPHHMIMSYNMLGGGGGQSESEEQEEAGGARAYSGQMMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKETISPSHSPTPLN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46615929 46616843 - Maker00034660 Lcy7g1989 638821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g1989 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 65 287 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy7g1989 304 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Lcy7g1989 304 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Lcy7g1989 304 SUPERFAMILY Homeodomain-like 221 290 IPR009057 -
Lcy7g1989 304 Gene3D - 211 291 - -
Lcy7g1989 304 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Lcy7g1989 304 FunFam Zinc-finger homeodomain protein 2 217 290 - -
Lcy7g1989 304 NCBIfam homeobox domain, ZF-HD class 229 285 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g1989 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2356 Lcy-Chr5:46391007 Lcy7g1989 Lcy-Chr7:46615929 5.22E-35 dispersed
Lcy5g2545 Lcy-Chr5:48212247 Lcy7g1989 Lcy-Chr7:46615929 9.76E-23 dispersed
Lcy6g0911 Lcy-Chr6:9251096 Lcy7g1989 Lcy-Chr7:46615929 4.80E-20 dispersed
Lcy6g1056 Lcy-Chr6:11439449 Lcy7g1989 Lcy-Chr7:46615929 2.70E-44 dispersed
Lcy7g0280 Lcy-Chr7:2431270 Lcy7g1989 Lcy-Chr7:46615929 4.36E-32 dispersed
Lcy10g0467 Lcy-Chr10:11126686 Lcy7g1989 Lcy-Chr7:46615929 2.49E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20458 None None None None Lcy TF