Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy7g2011 | ATGGATGAAAATGGTGGGATCAAGTTGACTGGAATCCGCCAGTTTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGCCGTGACAGCGAACCCGAAATCGAAAGCAGCAGCCCATGAAAACCCAAATAATACAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACGAATGTGTTGTGTTGTGATTCGGACGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGCTACTTGGCTGTCTATGTTGGCCCGGAGCTTCGCAGGTTTATCATTCCCACCAGCTATCTTAGCCATTCGGTGTTCAAGGTGTTGCTTGAAAAGGCAGAGGAGGAGTTTGGATTTGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTCTTTAACCATGGAAGGATAA | 498 | 50.0 | MDENGGIKLTGIRQFVRLKETLQHWQAVTANPKSKAAAHENPNNTNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAESSLTMEG | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 47215620 | 47217463 | - | Maker00006585 | Lcy7g2011 | 638843 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy7g2011 | 165 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 19 | 143 | IPR003676 | GO:0009733(InterPro) | |
| Lcy7g2011 | 165 | Pfam | Auxin responsive protein | 53 | 142 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1492 | Lcy-Chr3:41780970 | Lcy7g2011 | Lcy-Chr7:47215620 | 1.80E-14 | dispersed | |
| Lcy5g0426 | Lcy-Chr5:4432003 | Lcy7g2011 | Lcy-Chr7:47215620 | 1.12E-18 | dispersed | |
| Lcy7g2011 | Lcy-Chr7:47215620 | Lcy9g1752 | Lcy-Chr9:42724008 | 2.97E-21 | dispersed | |
| Lcy7g2011 | Lcy-Chr7:47215620 | Lcy1g0640 | Lcy-Chr1:5502312 | 8.56E-20 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy7g2011 | K14488 | - | csv:101207913 | 305.834 |