Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy7g2042 AATCAAGCATTTCAATGGAGATTTATGTTTTTGAAGAATACCGGTGATCTTGGTGGAAAAGAATTAGTCCAAATGAAGAATTTTACAAAAGAAGCAAGGTTCAAGGCCCACATTCGTAAGGGTAGCGTTGAGACGCTATCCCTTGAGTGTTTCAACGCTGCCCCGCAAGGAAGTAGGCGAGTATTCAAGGTAGCGTCAAGACGCTACCTCCACAGCGTCGAGACGCTGCGGCACTTCCGGGAACCCAATATTGGCAGAGGTGAGTTCTGTCGACACATTGGAGTTGAGCGTCGAGTTGTCTCTGCCTTAGCCCCATTAGCCACCAAACCAAATTCATCCACCATGGTGTTCCAAGATTTCGACCAAATCTCCGAACGCCGACGCGCCGAGAGGGCACGCAAGTTCCGACAGAGGGTGACGATCGCCGTGATCTCGGTGTCTGTGATCCTCCTGGTGGTGGTTGCCGCGGTGTTCGTCCAAGTCAACTCCTCGAAATCGAGCAGCAAAGACAGCAATGGGAACAGCAAAGATCCCGACACACCCGACACCAAACAGGTGTCCCGCGTCGACAAAATGATTGTCATGATATGCAACTCCACCGACTACAGAGGCAAATGCGAGACCACTCTCAAGGACGGCGTCAAGACTGACCCGGATTCCTCCGACCCCAAGGACCTGATCAAGCTCGCCATCTCCGCCGCCGCCACCGAGCTCAAATCCGCTGTGAAAAAGGCGGAGGGGTTCAACTTCGCGACGGCGGAGGAGAAGGGCGCGTTCGAGGACTGCAAGACCCTGTTCGAAGACGCGGTGGAGGAACTGGAGATGTCGGTGAGCGAAATGAGCAGGAAGAATCTGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAACAACTGGCTGAGCGCGGTGATTTCGTATCAGGAGACGTGCGTGGATGGGTTCCCAGATGGGAAGTTGAAGAGCGATATGGAGAAGGCGGTGAAGGCTGTGAAGGAACTCACCAGTAATTCCTTGGCCATGATAGCGCAGGTGGCTACCTTCTTCTCCACTTTTGAGAAGCCTGATGGGGAGGGAGCTGCAACACGACGTCGTCTCCTGGCCCGCGATGGCCTCCCCATCTGGATGAACACCAACGAACGGAGGATGCTGAAGGGCGCCACCGCCGGTGATAAGCCCAAGCCTAATGTTGTGGTCGCCAAAGATGGCTCTGGAAATTTCAAAACCATTAACGAAGCCTTGGCTGCCATGCCTGCAAAATACGATGGACGGTACGTGATCTATGTGAAGGAAGGGATCTACGAGGAGACGGTGGTGATTACGAAAAAGATGGTGAATGTTACAATGTACGGAGATGGGTCTCAGAAGAGCATGATCAGTGGGAAAAAGAACTTTGTGGACGGAGTTAGAACCTTCCAAACTGCAACATTTGTGGCACTTGGAGACGGGTTCTTGGGGCAAGCCATAGGATTCAGAAACACTGCAGGTCCAGAAAAGCACCAGGCCGTAGCCGCGAGAATCCAGGCGGACCGAGCCATATTCGTGAACTGTCGGTTCGAGGGGTACCAGGACACGTTATACGCCCATGCCCATCGCCAGTTCTACAGAAGCTGTCTGATAACAGGGACCATAGACTTCATCTTCGGGGACGCGGCCGCCATTTTCCAAAACTGCAACTTGATGGTCAGAAAGCCCTTAGACAACCAACAGAACATAGTAACAGCACAGGGCAGAACCGACAAACATGAGACCACAGGCATAGTGCTCCAAAACTGCAAGATTTTGCCCGACAAGACACTGGAGCCAGTGAAGGCCAATTTCAAGAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGGACCATTGTAATGGAGTCCACTATTGAAGATATTATTCATCCCGACGGCTGGATGCCTTGGGAAGGGGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGACGCCAGAGTCAAATGGCCTGGTTACAAGGTGATCGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCGCGTCGGTTCCTGTTCATGCCGGCCTATTTTGA 2118 52.27 NQAFQWRFMFLKNTGDLGGKELVQMKNFTKEARFKAHIRKGSVETLSLECFNAAPQGSRRVFKVASRRYLHSVETLRHFREPNIGRGEFCRHIGVERRVVSALAPLATKPNSSTMVFQDFDQISERRRAERARKFRQRVTIAVISVSVILLVVVAAVFVQVNSSKSSSKDSNGNSKDPDTPDTKQVSRVDKMIVMICNSTDYRGKCETTLKDGVKTDPDSSDPKDLIKLAISAAATELKSAVKKAEGFNFATAEEKGAFEDCKTLFEDAVEELEMSVSEMSRKNLGKLTAKTTPDLNNWLSAVISYQETCVDGFPDGKLKSDMEKAVKAVKELTSNSLAMIAQVATFFSTFEKPDGEGAATRRRLLARDGLPIWMNTNERRMLKGATAGDKPKPNVVVAKDGSGNFKTINEALAAMPAKYDGRYVIYVKEGIYEETVVITKKMVNVTMYGDGSQKSMISGKKNFVDGVRTFQTATFVALGDGFLGQAIGFRNTAGPEKHQAVAARIQADRAIFVNCRFEGYQDTLYAHAHRQFYRSCLITGTIDFIFGDAAAIFQNCNLMVRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKANFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESASVPVHAGLF 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48067961 48073695 - Maker00006604 Lcy7g2042 638874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy7g2042 705 Gene3D Invertase/pectin methylesterase inhibitor family protein 189 344 IPR035513 -
Lcy7g2042 705 FunFam Pectinesterase 189 345 - -
Lcy7g2042 705 FunFam Pectinesterase 389 704 - -
Lcy7g2042 705 MobiDBLite consensus disorder prediction 164 185 - -
Lcy7g2042 705 Pfam Plant invertase/pectin methylesterase inhibitor 192 340 IPR006501 GO:0004857(InterPro)
Lcy7g2042 705 CDD PMEI-like_3 196 346 - -
Lcy7g2042 705 NCBIfam pectinesterase inhibitor domain 189 344 IPR006501 GO:0004857(InterPro)
Lcy7g2042 705 Pfam Pectinesterase 395 689 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy7g2042 705 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 191 343 IPR035513 -
Lcy7g2042 705 SMART PMEI_2 188 340 IPR006501 GO:0004857(InterPro)
Lcy7g2042 705 Gene3D - 389 704 IPR012334 -
Lcy7g2042 705 SUPERFAMILY Pectin lyase-like 392 690 IPR011050 -
Lcy7g2042 705 ProSitePatterns Pectinesterase signature 2. 539 548 IPR033131 -
Lcy7g2042 705 PANTHER PECTINESTERASE 141 695 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2224 Lcy-Chr2:46148720 Lcy7g2042 Lcy-Chr7:48067961 8.12E-158 dispersed
Lcy6g1408 Lcy-Chr6:20932881 Lcy7g2042 Lcy-Chr7:48067961 3.18E-42 dispersed
Lcy6g2060 Lcy-Chr6:43683747 Lcy7g2042 Lcy-Chr7:48067961 3.42E-08 dispersed
Lcy7g2042 Lcy-Chr7:48067961 Lcy9g1690 Lcy-Chr9:42119248 2.18E-94 dispersed
Lcy12g1067 Lcy-Chr12:18601219 Lcy7g2042 Lcy-Chr7:48067961 1.42E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy7g2042 - - - 0.0