Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0002 ATGCGAGACGCTTGTAAGAGTTCGAATGGGTCAGAACTATTTGACGGGATCAATCCCAGAGGGCTGCTTTACTTGCCACAGCTCTCCCTTATGGAACTGCAGAACAACTACCTGAGCGGACCCCTTCCACAAGACATGCGCCCACTCCCATCCAAACTCGGCCTGCTAAACCTTTCCAACAATCGCTTCTCTGGATCCCTTCCCACCTCCATCGGGAACTTCACATACTTGCAGAATCTGCTTTTGAGCGGAAACCATTTCTCCGGGGACATTCCTTCTGAAATAGGCAAGCTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTCTCCGGTAGAATCCCGCCTGAATTGGGTACTTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCAGCTAACCTCTCCAATCCCAGTTCAAACCTCACAGATTCGCATCTTAAATTATCTAAACTTGTCTTGGAACCATCTGAACCAGAGCCTTCCCAAGGAAATTGGGTCCATAAAGAGCTTGACCTGTGCGGACTTTTCCCACAATAACTTGTCTGGTCCTATACCCGAAACTGGGCAGTTTTTACTCTTCAATTCCACATCCTTTGTGGGCAACCCTCAACTGTGTGGATCCTCGTTGAATCCCTGCAACCAGTCAGCATCAAAGTCTCAAACCCCAACAGGCGCCAATTCCAAAGTTGTTGGGAAATACAAGCTTGTGTTTGCGTTGGGACTATTGATGTGTTCGGTGATATTTGCAGCTCTGGCAATCATTCAGACAAGGAAGGCGAAGAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAAAGGAATCATGCCAAGTGGAGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAAACAAGGGATCTTCCCACGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCGAATAAGCAGACGAACCTGCTGGTTTACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCATGGGAAGAGGGGTTGTTGTCTAAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCAGCCAAAGGGCTTTGCTATTTGCACCATGACTGTTCGCCGCTCATAATCCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGATTTTGCCTAA 1284 46.88 MRDACKSSNGSELFDGINPRGLLYLPQLSLMELQNNYLSGPLPQDMRPLPSKLGLLNLSNNRFSGSLPTSIGNFTYLQNLLLSGNHFSGDIPSEIGKLRNLLKLDMSRNNFSGRIPPELGTCVSLTYLDLSLNQLTSPIPVQTSQIRILNYLNLSWNHLNQSLPKEIGSIKSLTCADFSHNNLSGPIPETGQFLLFNSTSFVGNPQLCGSSLNPCNQSASKSQTPTGANSKVVGKYKLVFALGLLMCSVIFAALAIIQTRKAKKKSSSWKLAAFQKLEFGSKDIIECIKENNIIGKGGAGIVYKGIMPSGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGCCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFA 427
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 224336 225619 - Maker00037320 Lcy8g0002 638894
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0002 427 Gene3D Phosphorylase Kinase; domain 1 252 365 - -
Lcy8g0002 427 Gene3D Transferase(Phosphotransferase) domain 1 366 427 - -
Lcy8g0002 427 SUPERFAMILY Protein kinase-like (PK-like) 283 426 IPR011009 -
Lcy8g0002 427 FunFam LRR receptor-like serine/threonine-protein kinase 48 123 - -
Lcy8g0002 427 Pfam Protein kinase domain 290 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0002 427 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 257 365 - -
Lcy8g0002 427 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 426 IPR050647 -
Lcy8g0002 427 ProSiteProfiles Protein kinase domain profile. 288 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0002 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g0002 427 Pfam Leucine Rich Repeat 149 169 IPR001611 GO:0005515(InterPro)
Lcy8g0002 427 Pfam Leucine Rich Repeat 77 98 IPR001611 GO:0005515(InterPro)
Lcy8g0002 427 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Lcy8g0002 427 Pfam Leucine Rich Repeat 124 140 IPR001611 GO:0005515(InterPro)
Lcy8g0002 427 Pfam Leucine Rich Repeat 55 74 IPR001611 GO:0005515(InterPro)
Lcy8g0002 427 SUPERFAMILY L domain-like 16 214 - -
Lcy8g0002 427 Gene3D Ribonuclease Inhibitor 7 224 IPR032675 -
Lcy8g0002 427 SMART serkin_6 288 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0002 427 FunFam Leucine-rich repeat receptor-like protein kinase 124 217 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0002 Lcy-Chr8:224336 Lcy8g0015 Lcy-Chr8:686630 1.38E-84 dispersed
Lcy8g0002 Lcy-Chr8:224336 Lcy13g1039 Lcy-Chr13:22711472 3.15E-158 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66093 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0002 - - - 0.0