Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0035 ATGTTATCCGGGAAAACGCTCCTATTTCTGGCTTTCTTCTGCGTTGGAATTCATAATATCTTCTCCTATACAGACCCAAACGATGTTGTAATCCTGGTATCGTTGAAAGAGGAATGGCAAAATACACCACCAACATGGGGGACATCAAGTGATCCATGTGGAGATCTCTGGGAAGGAGTGACTTGCAACAATAATTCTAGAGTCACTGAATTAAAATTACCATCTATGGGGCTGATTGGTCATCTTAATGGTGACATTGGAGGCCTTACTGAACTGATAACATTGGACCTGTCATTTAATAAAAATCTCACTGGTCCACTCTCTCCTACGTTGGGGAATTTGCGAAACTTGAAGGCCCTAATCCTTGCTGCATGTGGCTTCAGTGGCCCTATTCCCCAAGAGTTGGGCAACCTTACTGAGTTGTTGTCCTTGGCCTTGAATGCAAACGAGCTCATTGGTCCTATACCACCTACTCTGGGAAAACTCTCCAAACTTTCATTGCTAGACTTGGTGGATAATCAGTTGAGTGGACCTCTCCCTGTCTCACCAGGTCTGGACAATCTTCTTCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTATCAGGCCCTATACCACAAAATCTTTTTAGCTCTGCTATGAAATTAATACACATAGTATTTGATGAGAATCAGTTTTCTGGGAGTATTCCACCAACCTTGGGACTTGTTGAGAACCTTGAAGTTCTCCGACTTGATCGGAATAATCTAGCAGAACATGTCCCATCAAATCTTAGCAACTTAGGACGACTCCGTCAATTGAATTTAGCACACAATAATCTGACAGGTCCATTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTAACAACTCTTTTGACCCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTTACCGCTTTGATCATTGAAACTGGGCCATTGCAAGGATCCGTCCCAGAAACAATCTTTAGCTTATCACAGATACAACAAATAAAACTCAAGTACAATTCATTTCGTGGAACATTAAGCATGGGTGGCAACGTCAGTCCGCATCTGGAGCTTGTTGATTTGGAAAATAATCAGATTACCCAACTTGCATTGTTTGGATATAACAAAACTTTGATGCTTAAAGGAAATCCTGCGTGTAACGTTGATCCTCTGTTAATAAAGGAAAATGATTGCCGACTTCCAATATCAGGTCCGAAGCCTGATTCTTCCAGTCCTGTCAGTGTCAATGTCAAGTACTGTGAAACTAGCAAATGCTCCAATGGCGAGAAGAATAACCCTCAGAGCTGTGAATCAGCAGCAGCAGCAGCAGATGCGGGAAATTTTAGTAGCAACAGGTGGGTTATTGGGATTGCAATCGGTGGTGCCTTACTGGTCCTGAGCCTCATTGGAGTTGGAATATATGTAATTAAGCAGAAGAAACAAGTATTGAAAGCGATTTCATCGAGCAAGCCATTTGCTTCCTGGTCATCGATTGAACAAGAAAGTGGAGACGCACCACAACTGAAGGGAGCAATATATTTTTCGTATGATGAGCTTAGAAAGTTGACAAATAATTTCTCCCAAAGTAATGAGATAGGAGTTGGAGGATATGGAAAGGTTTACAGAGGAATGACTGGGCATGGACGCCTATTCGCAATCAAAAGAGCTAAGCAAGGATCGAAGCAGGGTGCACATGAGTTCAAGACTGAGATTGAATTGCTTTCGCGAGTTCATCACAAGAATCTAGTCGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCTTGCCTAATGGATCACTTCGAGACACCTTTGGCTTTACCGCTTTACCGAGAGTTTGCTCTTTATCCAAGACAACTCTTCTTCTCCAGAGTATACCACCTGCCCAACAGAGCCCAAACACGGATCGCCCCATGACTACTTCAAGGCTCACAACTTCTTTGTTTGACACCCGAGGATTCCACCCAACACGGCTACGTGCGGGGCATGGTTCTAATACCACTTGGAGTTCGTATATCCATCTTGGTTGGAAGAGAAGACTCCAAATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCTATAATCCATAGAGATATTAAGTCCTCCAATATTCTCTTGGATGAATATTTAAATGCGAAGGTAGCAGATTTTGGGCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTTCCGGAGTCAAAGGCACGTGGGGTTATTTGGATCCAGAATATTATAAAACACAGCGAATAACGGAGAAGAGTGACGTATATAGCTTTGGAGTTGTTTTGCTTGAACTGATTACTGCTAAGCTACCAATTGAGAAAGGAACATACTTAGCTCGTGAAGTGCTTAGGCTAGTGAACAAGAGTGACAAAGCAGATTACGGGTTGACGAATATAATAGATGCAACCATTAGAAATGAGGTGACAAATCTAAGTGCGTTTGGACGGTTCTTGGAGTTGGCCATGAAATGTGTCGAAGAATCAGCTGCAAATCGCCCCATGATGAGTGAAGTGGTTAAAGAAATTGAGAGTATCTTACAAAATTTATCTTCACCGCCACCAAGTTTGCAACTTTGA 2640 42.46 MLSGKTLLFLAFFCVGIHNIFSYTDPNDVVILVSLKEEWQNTPPTWGTSSDPCGDLWEGVTCNNNSRVTELKLPSMGLIGHLNGDIGGLTELITLDLSFNKNLTGPLSPTLGNLRNLKALILAACGFSGPIPQELGNLTELLSLALNANELIGPIPPTLGKLSKLSLLDLVDNQLSGPLPVSPGLDNLLQAKHFHLSKNRLSGPIPQNLFSSAMKLIHIVFDENQFSGSIPPTLGLVENLEVLRLDRNNLAEHVPSNLSNLGRLRQLNLAHNNLTGPLPNLTQMTSLCVVDLSNNSFDPSTAPDWFSSLPSLTALIIETGPLQGSVPETIFSLSQIQQIKLKYNSFRGTLSMGGNVSPHLELVDLENNQITQLALFGYNKTLMLKGNPACNVDPLLIKENDCRLPISGPKPDSSSPVSVNVKYCETSKCSNGEKNNPQSCESAAAAADAGNFSSNRWVIGIAIGGALLVLSLIGVGIYVIKQKKQVLKAISSSKPFASWSSIEQESGDAPQLKGAIYFSYDELRKLTNNFSQSNEIGVGGYGKVYRGMTGHGRLFAIKRAKQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFLPNGSLRDTFGFTALPRVCSLSKTTLLLQSIPPAQQSPNTDRPMTTSRLTTSLFDTRGFHPTRLRAGHGSNTTWSSYIHLGWKRRLQIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYLNAKVADFGLSKLVFDHEKGHISSGVKGTWGYLDPEYYKTQRITEKSDVYSFGVVLLELITAKLPIEKGTYLAREVLRLVNKSDKADYGLTNIIDATIRNEVTNLSAFGRFLELAMKCVEESAANRPMMSEVVKEIESILQNLSSPPPSLQL 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1072637 1104223 - Maker00037356 Lcy8g0035 638927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0035 879 Gene3D Phosphorylase Kinase; domain 1 501 605 - -
Lcy8g0035 879 Pfam Leucine Rich Repeat 263 280 IPR001611 GO:0005515(InterPro)
Lcy8g0035 879 Pfam Leucine Rich Repeat 239 261 IPR001611 GO:0005515(InterPro)
Lcy8g0035 879 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515(InterPro)
Lcy8g0035 879 FunFam Predicted protein 184 399 - -
Lcy8g0035 879 FunFam Leucine-rich repeat family protein 27 183 - -
Lcy8g0035 879 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524(InterPro)
Lcy8g0035 879 PANTHER RECEPTOR-LIKE PROTEIN 55 44 864 - -
Lcy8g0035 879 ProSiteProfiles Protein kinase domain profile. 530 867 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0035 879 Gene3D Transferase(Phosphotransferase) domain 1 675 873 - -
Lcy8g0035 879 SUPERFAMILY L domain-like 46 387 - -
Lcy8g0035 879 FunFam Leucine-rich repeat receptor-like protein kinase 673 873 - -
Lcy8g0035 879 FunFam Leucine-rich repeat protein kinase family protein 496 605 - -
Lcy8g0035 879 Gene3D Ribonuclease Inhibitor 182 280 IPR032675 -
Lcy8g0035 879 Pfam Protein tyrosine and serine/threonine kinase 532 862 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g0035 879 SUPERFAMILY Protein kinase-like (PK-like) 506 861 IPR011009 -
Lcy8g0035 879 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Lcy8g0035 879 SMART serkin_6 530 867 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0035 879 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Lcy8g0035 879 Gene3D Ribonuclease Inhibitor 281 403 IPR032675 -
Lcy8g0035 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0035 Lcy-Chr8:1072637 Lcy9g1020 Lcy-Chr9:33629571 1.58E-202 dispersed
Lcy6g1411 Lcy-Chr6:20994050 Lcy8g0035 Lcy-Chr8:1072637 2.92E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66095 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0035 - - - 0.0