Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0059 ATGTTCTTTAAACCAGGAGGAGGCAAGAGATCTTCCTGTCTATTATTCTGTGAAGAAGGGGATACTCCCATGTCTTCAATGTTCTGTAGATGGAATCCTTTAAGACTGATTCTTCAGGGTCTGCTGTTGTCCTCATTATTGAGGTTGAATTATGCATCCACGGATCCTGATGTGGAAGGAGAAGCTTTGGTAGACTTGTTAGGGGCACTAAATGATTCCAATCATCACATAACTGATTGGAATTATCATTTTGTTAGCCCTTGCTTTAGTTGGTCGCATATTGCCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGCTGGATTTTCAGGATCACTTTCTCATTCAATTACCAAACTGAAATTTTTGGCCAGCCTGGATTTGCAGAATAATAATATAGCAGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAAAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGGTCAACTTGTTGGTCTAAAGCATCTTCACTTGCCTGACCCTCGATTTTCTTACACTCTTCCCCCAAATGCTGGTGGCAGGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCACAATTCTTTTCGATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGCTTTAGGTTGGATAAACCCTGTGTTTCGACGTCTCCCCATCGAGCTTCTGTAAAGAATTCAAAGTTTGGGGTAGTGGCAAGTACTGCAAGTTGTGGGGGATTCATACTTCTGTCAATTGGTGCCTTCTTCGCTTATAGATGCTTCTACATGCATAAGCTTAAGGATTCTAAGTTTGTTGATGTTGCTGGTGAAGATGAATGCAAACTTTGCTTTGGGCAAATCAGAAGATTTTCGTTGCGGGAAATTCAACTCGCTACCGATAACTTTAATGAAACAAACATCATTGGCCAAGGAGGCTTTGGAAAAGTTTATAAAGGCATCCTCTCAGATGCCTCCAAGGTAGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTGAGAGAAGTTCATTTAATAAGCGTTGCGGTGCATAGAAATCTCCTCCGTTTGATCGGATTCTGCACAACAACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTCAGCGTGGCGCATCGCTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGGATTGCTTTTGGTGCAGCACATGGTTTGGAGTACTTGCATGAGCATTGTAATCCTAAGATCATTCATCGTGATCTAAAGGCTGCAAATATCTTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCAAAGCTAGTTGATACTAAAGCGACTCATATTACTACTCAAGTCCGTGGTACAATGGGTCACATTGCCCCAGAATACTTGTCCACGGGAAAGTCGTCTGAAAAGACGGATGTTTTCGGATATGGTATAACTCTTCTTGAACTTGTCACTGGTCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAGTAGGCTTGAAGATGTTGTGGACAAAAACTTAAAGAGCTACAACGAAAAGGAAGTCGAAAACATAGTTCAGGTGGCATTGCTTTGCACTCAAAGTTCGCCAGAGGACCGGCCGACGATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTGTCCCTCTTGTGTCACCAGTTTCTTTGGGGTGAAGAGTCAAGCCATGATCAAGAAGCCATTCAGTTGTCTAAAGCCAGATAG 1911 43.01 MFFKPGGGKRSSCLLFCEEGDTPMSSMFCRWNPLRLILQGLLLSSLLRLNYASTDPDVEGEALVDLLGALNDSNHHITDWNYHFVSPCFSWSHIACRNGNVISLSLGSAGFSGSLSHSITKLKFLASLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPAAWGQLVGLKHLHLPDPRFSYTLPPNAGGRDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASVKNSKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSKFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVHLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKATHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRESRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFLWGEESSHDQEAIQLSKAR 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1537500 1544270 - Maker00037360 Lcy8g0059 638951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0059 636 Gene3D Phosphorylase Kinase; domain 1 283 390 - -
Lcy8g0059 636 FunFam Somatic embryogenesis receptor-like kinase 1 391 607 - -
Lcy8g0059 636 SUPERFAMILY Protein kinase-like (PK-like) 295 587 IPR011009 -
Lcy8g0059 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g0059 636 SUPERFAMILY L domain-like 59 215 - -
Lcy8g0059 636 FunFam Leucine-rich repeat receptor-like kinase 58 188 - -
Lcy8g0059 636 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Lcy8g0059 636 FunFam Somatic embryogenesis receptor kinase 1 283 390 - -
Lcy8g0059 636 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Lcy8g0059 636 ProSiteProfiles Protein kinase domain profile. 314 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0059 636 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 42 635 - -
Lcy8g0059 636 Pfam Leucine rich repeat 125 178 IPR001611 GO:0005515(InterPro)
Lcy8g0059 636 Pfam Protein tyrosine and serine/threonine kinase 318 586 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g0059 636 Gene3D Ribonuclease Inhibitor 56 234 IPR032675 -
Lcy8g0059 636 SMART serkin_6 314 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0059 636 Gene3D Transferase(Phosphotransferase) domain 1 391 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1021 Lcy-Chr6:11036422 Lcy8g0059 Lcy-Chr8:1537500 5.94E-163 dispersed
Lcy6g1022 Lcy-Chr6:11066891 Lcy8g0059 Lcy-Chr8:1537500 1.40E-70 dispersed
Lcy8g0059 Lcy-Chr8:1537500 Lcy9g0626 Lcy-Chr9:20737737 8.02E-144 dispersed
Lcy10g1527 Lcy-Chr10:39732833 Lcy8g0059 Lcy-Chr8:1537500 1.49E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66096 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0059 - - - 0.0