Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0114 ATGGCTGTTGAAGGATCTGGATCGTCTCCATTGAAGCTCTACTCGTTCTGGGCCAGCACTTGTGCTCATCGTGTTCGAATTGCCCTCAACTTCAAAGGGCTAAAATTTGAGTACAAAGCTGTCGATATTATGAAGGGAGAGCATTTGAGTCCTGACTATCTAAAGCTCAATCCTGTTGGCTTTGTACCTGCTCTTGTGGATGGAGATATTGTTGTTGCTGACTCTTTTGCTATAATAATGTATTTGGAGGAAAAGTATCCTCAACATCCTCTGTTGCCTAGTGATCTTCATAAAAGGGCTATTAATTACCAGGCTGCAAATATTGTTTCTTCAAGCATTCAGCCTCTTCAAAATCTAATTGTTGAGAATTACATTGAGGAAAAATGTGGCCCTGAGGAGAAACTTTCTTGGGTCCATATGATCATTGGAAAAGGTTTTTTAGCACTTGAAAAATTGCTAAAAGTTCATGCTGGAAAATTTGCTACTGGAGACGAAATTTATCTGGCGGATTTGTTTTTGGCACCTCAACTTGACCGCGCCATTCAAACATTCAATGTTGACATGGTATTACTATCCAAGTTTCCACTTTTATCAAGATTGTACGAGGAATACAAGGAGGTACCAGCATTTCAAGATGCAGCACCAGAGAACCAACCTGATGCTCCTTCTCAAAGCTCTGGCTAA 684 40.5 MAVEGSGSSPLKLYSFWASTCAHRVRIALNFKGLKFEYKAVDIMKGEHLSPDYLKLNPVGFVPALVDGDIVVADSFAIIMYLEEKYPQHPLLPSDLHKRAINYQAANIVSSSIQPLQNLIVENYIEEKCGPEEKLSWVHMIIGKGFLALEKLLKVHAGKFATGDEIYLADLFLAPQLDRAIQTFNVDMVLLSKFPLLSRLYEEYKEVPAFQDAAPENQPDAPSQSSG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2633101 2642487 + Maker00026993 Lcy8g0114 639006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0114 227 Pfam Glutathione S-transferase, N-terminal domain 9 83 IPR004045 -
Lcy8g0114 227 Gene3D - 94 224 - -
Lcy8g0114 227 FunFam Maleylacetoacetate isomerase 94 224 - -
Lcy8g0114 227 PANTHER MALEYLACETOACETATE ISOMERASE 10 221 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Lcy8g0114 227 Gene3D Glutaredoxin 9 93 - -
Lcy8g0114 227 SFLD Glutathione Transferase (cytosolic) 11 204 IPR040079 -
Lcy8g0114 227 FunFam Glutathione S-transferase Z1 9 93 - -
Lcy8g0114 227 SFLD Main (cytGST) 11 204 - -
Lcy8g0114 227 SUPERFAMILY Thioredoxin-like 8 93 IPR036249 -
Lcy8g0114 227 SUPERFAMILY GST C-terminal domain-like 90 222 IPR036282 -
Lcy8g0114 227 CDD GST_N_Zeta 11 83 IPR034333 -
Lcy8g0114 227 NCBIfam maleylacetoacetate isomerase 12 221 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Lcy8g0114 227 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 9 90 IPR004045 -
Lcy8g0114 227 Pfam Glutathione S-transferase, C-terminal domain 134 209 IPR004046 -
Lcy8g0114 227 CDD GST_C_Zeta 96 218 IPR034330 -
Lcy8g0114 227 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 95 223 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0114 Lcy-Chr8:2633101 Lcy8g0117 Lcy-Chr8:2796833 8.74E-111 dispersed
Lcy8g0114 Lcy-Chr8:2633101 Lcy8g0116 Lcy-Chr8:2716886 2.71E-76 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0114 K01800 - csv:116401624 372.859