Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0116 ATGCTACTCCAAATAAGGGAAATATTTTGCACACGATTTGGAAAGAATTTGATTGGAAATTGGGATAGCGTCGAGACACTATCTCTTGTGTTCACGGCGTTGAGCAATAGTGTCAAGCAACGTCTTGACGCTTATGCTACTATCTTCAACTTTAGCCATGTGATGTGGGACAACTACCTGTGGGCTGAAATTGCGTCGTCTCGGTTGAAGCTCTACTCGTACTGGAGAAGCACTTGTTCTCATCGTGTTCGAATTGCCCTCCATCTGGAAGGGCTAAACTATGAGTACAAAGCTGTTGACCTAGTAAAGGGAGAGCATTTCTGTTCTGAATATGAAAAGCTCAATCCTATCGGTTACGTACCGACTCTCGTCGATGGGGATGTTGTTGTTGCAGACTCTTTTGCTATAATAATGTATTTGGATGAAAAGTATCCTCAACATCCTCTTCTGCCTCGTGATCTTCATAAAAGGGCTATTAATTACCAGGCTGCAAATATTGTTTCTTCAAGCATACAGCCTCTTCAAAATCTAGCTGTTGTGAAATACATAGAGGAAAAATCTGGTCCAGAGGAGAAACTTGCTTGGGTTCAACATCACATTGGAAAAGGTTTTGCAGGTAAGTTTGAGTTGAGATGA 636 41.67 MLLQIREIFCTRFGKNLIGNWDSVETLSLVFTALSNSVKQRLDAYATIFNFSHVMWDNYLWAEIASSRLKLYSYWRSTCSHRVRIALHLEGLNYEYKAVDLVKGEHFCSEYEKLNPIGYVPTLVDGDVVVADSFAIIMYLDEKYPQHPLLPRDLHKRAINYQAANIVSSSIQPLQNLAVVKYIEEKSGPEEKLAWVQHHIGKGFAGKFELR 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2716886 2721580 + Maker00027197 Lcy8g0116 639008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0116 211 SFLD Glutathione Transferase (cytosolic) 69 183 IPR040079 -
Lcy8g0116 211 Gene3D - 152 209 - -
Lcy8g0116 211 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 67 148 IPR004045 -
Lcy8g0116 211 CDD GST_N_Zeta 69 141 IPR034333 -
Lcy8g0116 211 PANTHER MALEYLACETOACETATE ISOMERASE 67 205 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Lcy8g0116 211 NCBIfam maleylacetoacetate isomerase 70 206 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Lcy8g0116 211 Pfam Glutathione S-transferase, N-terminal domain 68 142 IPR004045 -
Lcy8g0116 211 SFLD Main (cytGST) 69 183 - -
Lcy8g0116 211 FunFam Glutathione S-transferase Z1 67 151 - -
Lcy8g0116 211 SUPERFAMILY GST C-terminal domain-like 148 205 IPR036282 -
Lcy8g0116 211 SUPERFAMILY Thioredoxin-like 60 152 IPR036249 -
Lcy8g0116 211 Gene3D Glutaredoxin 66 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0233 Lcy-Chr7:2040262 Lcy8g0116 Lcy-Chr8:2716886 4.97E-08 dispersed
Lcy8g0116 Lcy-Chr8:2716886 Lcy11g1731 Lcy-Chr11:41137837 2.29E-10 dispersed
Lcy8g0114 Lcy-Chr8:2633101 Lcy8g0116 Lcy-Chr8:2716886 2.71E-76 proximal
Lcy8g0116 Lcy-Chr8:2716886 Lcy8g0117 Lcy-Chr8:2796833 7.16E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0116 K01800 - csv:101213302 242.662