Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0117 ATGGCTGAAAATATGGCGTCGCCGGTCGCAGCTTCTCCGTTGAAGCTTTACTCGTACTGGAGGAGCTCTTGTTCTCACCGCGTTCGAATTGCTCTAAACTTGAAAGGGTTAAATTTCGAATACAAAGCTGTTAACCTTCTCAAGGGAGAGCAATTCACTCCCGAATACGAAAAGCTCAATCCTATCGGTTATGTACCTACTCTCGTGGATGGAGATATTGTTATTGCCGACTCTTTTGCTATATTAATGTATTTGGAGGAGAAGTATCCTCAGAATCCTCTGTTGCCTCGTGATCTTGGTAAAAGAGCTGTTAATTATCAGGCTGCAAACATCGTTTCTTCTAGCATACAGCCTCTTCAAAATTTAGCTGTTCTGAAGTACGTTGAGGAAAAATCTGGTCCAGAGGAGAAACTTCGTTGGGTTCGACATCACATTGAAAAAGGCTTTACAGCAATTGAAAAGCTGCTAAAAGCTCATGCTGGAAAATTTGCTACTGGAGACGAAATCTTTCTGGCAGACTTGTTTCTGGCTCCTCAAATTCATGGCGCCATTAATAGATTCAGTGTTGACATGGTATTACTGATTCTTCAAATTTCATGTGCTGGTTGTAAATTAGAGCTTAATTGTGTCATTGGTCTGCAAAGCTTTGTTAATGATATAACAAGTACTATTACACTGTCACTCTGTTGTTTTTACTATCAATATTCTTTGCAGTCCAAATTTCCACTTTTGTCCAGGTTGAATGAGGAATACAATGCTATACCAGCATTTCAAGATGCAGCGCCAGCAAAGCAGCCTGATGCTCCTCAAAGCTCTAGCTAA 822 40.63 MAENMASPVAASPLKLYSYWRSSCSHRVRIALNLKGLNFEYKAVNLLKGEQFTPEYEKLNPIGYVPTLVDGDIVIADSFAILMYLEEKYPQNPLLPRDLGKRAVNYQAANIVSSSIQPLQNLAVLKYVEEKSGPEEKLRWVRHHIEKGFTAIEKLLKAHAGKFATGDEIFLADLFLAPQIHGAINRFSVDMVLLILQISCAGCKLELNCVIGLQSFVNDITSTITLSLCCFYYQYSLQSKFPLLSRLNEEYNAIPAFQDAAPAKQPDAPQSSS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2796833 2801349 + Maker00027202 Lcy8g0117 639009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0117 273 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 98 270 IPR010987 -
Lcy8g0117 273 SFLD Glutathione Transferase (cytosolic) 14 183 IPR040079 -
Lcy8g0117 273 Gene3D Glutaredoxin 12 96 - -
Lcy8g0117 273 Gene3D - 232 273 - -
Lcy8g0117 273 SFLD Main (cytGST) 14 183 - -
Lcy8g0117 273 FunFam Glutathione S-transferase Z1 12 96 - -
Lcy8g0117 273 SUPERFAMILY GST C-terminal domain-like 93 191 IPR036282 -
Lcy8g0117 273 CDD GST_N_Zeta 14 86 IPR034333 -
Lcy8g0117 273 Gene3D - 97 194 - -
Lcy8g0117 273 CDD GST_C_Zeta 101 265 IPR034330 -
Lcy8g0117 273 PANTHER MALEYLACETOACETATE ISOMERASE 13 268 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Lcy8g0117 273 Pfam Glutathione S-transferase, N-terminal domain 12 86 IPR004045 -
Lcy8g0117 273 NCBIfam maleylacetoacetate isomerase 15 191 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Lcy8g0117 273 SUPERFAMILY Thioredoxin-like 8 97 IPR036249 -
Lcy8g0117 273 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 12 93 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1895 Lcy-Chr11:42659106 Lcy8g0117 Lcy-Chr8:2796833 3.78E-23 dispersed
Lcy8g0114 Lcy-Chr8:2633101 Lcy8g0117 Lcy-Chr8:2796833 8.74E-111 dispersed
Lcy8g0117 Lcy-Chr8:2796833 Lcy11g1731 Lcy-Chr11:41137837 8.44E-10 dispersed
Lcy8g0116 Lcy-Chr8:2716886 Lcy8g0117 Lcy-Chr8:2796833 7.16E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0117 K01800 - csv:101213302 346.665