Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g0147 | ATGCTGACTTTTCTTTCCAATTCAGCCATTCTTTCTTCGCCTGTACCTATGTCAACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCATTAGATGAAAGTCTTCAGGAAGCTTTAGTCTTGAAGGTTTGTTCTTCAAAAGGATTTGGATTCTTCTGGGTGGATCGAGGTAGACTTCAGTCTTCAGTGAGATTGGAAGATGATCGGAGCCTCGTTCTTCAATTCTGCAACAGGATTTGGAGAGGATCTGAGCTTCGATCTTCAATTCTGCGGCGAGATTTGAAGAGGATCTTAGCTTCGTTCTTCAGTTTTGCAGCAGGATTTGAGGATGATCGGAACCTTGTTCTTCATTCTGCGTCGGGATTTGAAGATGATCAGAGCCTTGTTCTTCAGTTCTGCAACGGCCGCCATCGCTCTTTCTCCGGCCACCATACGAACGCCTTCAAGCTTCCAAACAAAAGGAAAATGCGTCCAATCTTGATGAAAGGCCATGAGCGGCCATTGACTTTCCTCAAGTACAATCGGGACGGTGATCTCCTTTTCTCCTGCGCCAAGGATCACAATCCCACCGTCTGGTTCGCCGACAACGGCGAGCGCTTGGGGACTTATCGTGGTCATAATGGCGCCGTTTGGTGCTGCGATGTCTCCAGAGATTCAATGCGGCTCATCACCGGCAGTGCGGATCAAACGGCAAAGTTATGGAATGTACAAACTGGACAGCAACTCTTCTCGTTCAATTTCGATTCACCTGCCAGGGCGGTTGATTTCTCTGTTGGCGATAAGCTTGCAGTTATTACCACTGATCCTTTCATGGAATTGCCTTCTGCTATTCATCTTAAACGCATTGCCAGAGACCCCTTCGAACAGAATGGTGAATCTGTGCTCGTTCTTAAGGGTCCCCAGGGAAGAATCAATAGAGCTGTTTGGGGGTCTCTAAATAAGACCATTATAAGTGCAGGTGAAGATGCTATTATTCGCATTTGGGATTCTGAGATTTTTTATGAGGTTCTCATGGCCCGTGAGGCGACTGGACTTTATATAGCTAGCAAGAGGGATGGGATTGTTTTCAATGTTAACTCTACAGGCAAAATTTTAAAAGAATCAGACAAGGAGACAGGCCATAAAAAAACAATAACTTCCCTTACGAAATCCTCTGATGGTTCACATTTTGTCACTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATACTAGAACGTTAACACTTATCAAGACATACGTGACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCATGTAGTACTTGGTGGTGGACAGGATGCTTCAGCAGTAACAACAACCGATCATCGTGCCGGAAAGTTTGAAGCTAAATTTTATGACAAGATTCTTCAAGAAGAGATTGGAGGTGTAAAAGGCCATTTTGGACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTGAGACTGCATCATTTTGACCCTGATTACTTCAACATCAAGATTTAA | 1548 | 44.77 | MLTFLSNSAILSSPVPMSTIITDITSGSDVSFACSLDESLQEALVLKVCSSKGFGFFWVDRGRLQSSVRLEDDRSLVLQFCNRIWRGSELRSSILRRDLKRILASFFSFAAGFEDDRNLVLHSASGFEDDQSLVLQFCNGRHRSFSGHHTNAFKLPNKRKMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHLKRIARDPFEQNGESVLVLKGPQGRINRAVWGSLNKTIISAGEDAIIRIWDSEIFYEVLMAREATGLYIASKRDGIVFNVNSTGKILKESDKETGHKKTITSLTKSSDGSHFVTGSLDKSARLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI | 515 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3562167 | 3569531 | - | Maker00027002 | Lcy8g0147 | 639039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g0147 | 515 | Hamap | Eukaryotic translation initiation factor 3 subunit I [EIF3I]. | 161 | 515 | IPR027525 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 473 | 503 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Gene3D | - | 340 | 515 | IPR015943 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Pfam | WD domain, G-beta repeat | 377 | 408 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Pfam | WD domain, G-beta repeat | 202 | 240 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Pfam | WD domain, G-beta repeat | 297 | 334 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Pfam | WD domain, G-beta repeat | 166 | 197 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Pfam | WD domain, G-beta repeat | 472 | 503 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | SUPERFAMILY | WD40 repeat-like | 160 | 503 | IPR036322 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | PRINTS | G protein beta WD-40 repeat signature | 321 | 335 | IPR020472 | - | |
Lcy8g0147 | 515 | PRINTS | G protein beta WD-40 repeat signature | 227 | 241 | IPR020472 | - | |
Lcy8g0147 | 515 | PRINTS | G protein beta WD-40 repeat signature | 395 | 409 | IPR020472 | - | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 302 | 334 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 166 | 207 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I | 161 | 512 | - | GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER) | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 208 | 245 | - | - | |
Lcy8g0147 | 515 | SMART | WD40_4 | 411 | 450 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | SMART | WD40_4 | 158 | 198 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | SMART | WD40_4 | 201 | 240 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | SMART | WD40_4 | 366 | 408 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | SMART | WD40_4 | 466 | 505 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | SMART | WD40_4 | 295 | 334 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | Gene3D | - | 124 | 339 | IPR015943 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 376 | 417 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 227 | 241 | IPR019775 | - | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 208 | 249 | IPR001680 | GO:0005515(InterPro) | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 473 | 503 | - | - | |
Lcy8g0147 | 515 | CDD | WD40 | 167 | 503 | - | - | |
Lcy8g0147 | 515 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 376 | 411 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1126 | Lcy-Chr12:21393178 | Lcy8g0147 | Lcy-Chr8:3562167 | 8.68E-13 | dispersed | |
Lcy10g0603 | Lcy-Chr10:16947614 | Lcy8g0147 | Lcy-Chr8:3562167 | 5.88E-92 | transposed | |
Lcy10g0415 | Lcy-Chr10:8866663 | Lcy8g0147 | Lcy-Chr8:3562167 | 9.82E-13 | wgd | |
Lcy10g0538 | Lcy-Chr10:13900282 | Lcy8g0147 | Lcy-Chr8:3562167 | 4.41E-11 | wgd | |
Lcy7g1844 | Lcy-Chr7:41498529 | Lcy8g0147 | Lcy-Chr8:3562167 | 5.02E-11 | wgd | |
Lcy7g1394 | Lcy-Chr7:21910016 | Lcy8g0147 | Lcy-Chr8:3562167 | 2.42E-11 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g0147 | K03246 | - | csv:101211648 | 637.106 |