Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0147 ATGCTGACTTTTCTTTCCAATTCAGCCATTCTTTCTTCGCCTGTACCTATGTCAACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCATTAGATGAAAGTCTTCAGGAAGCTTTAGTCTTGAAGGTTTGTTCTTCAAAAGGATTTGGATTCTTCTGGGTGGATCGAGGTAGACTTCAGTCTTCAGTGAGATTGGAAGATGATCGGAGCCTCGTTCTTCAATTCTGCAACAGGATTTGGAGAGGATCTGAGCTTCGATCTTCAATTCTGCGGCGAGATTTGAAGAGGATCTTAGCTTCGTTCTTCAGTTTTGCAGCAGGATTTGAGGATGATCGGAACCTTGTTCTTCATTCTGCGTCGGGATTTGAAGATGATCAGAGCCTTGTTCTTCAGTTCTGCAACGGCCGCCATCGCTCTTTCTCCGGCCACCATACGAACGCCTTCAAGCTTCCAAACAAAAGGAAAATGCGTCCAATCTTGATGAAAGGCCATGAGCGGCCATTGACTTTCCTCAAGTACAATCGGGACGGTGATCTCCTTTTCTCCTGCGCCAAGGATCACAATCCCACCGTCTGGTTCGCCGACAACGGCGAGCGCTTGGGGACTTATCGTGGTCATAATGGCGCCGTTTGGTGCTGCGATGTCTCCAGAGATTCAATGCGGCTCATCACCGGCAGTGCGGATCAAACGGCAAAGTTATGGAATGTACAAACTGGACAGCAACTCTTCTCGTTCAATTTCGATTCACCTGCCAGGGCGGTTGATTTCTCTGTTGGCGATAAGCTTGCAGTTATTACCACTGATCCTTTCATGGAATTGCCTTCTGCTATTCATCTTAAACGCATTGCCAGAGACCCCTTCGAACAGAATGGTGAATCTGTGCTCGTTCTTAAGGGTCCCCAGGGAAGAATCAATAGAGCTGTTTGGGGGTCTCTAAATAAGACCATTATAAGTGCAGGTGAAGATGCTATTATTCGCATTTGGGATTCTGAGATTTTTTATGAGGTTCTCATGGCCCGTGAGGCGACTGGACTTTATATAGCTAGCAAGAGGGATGGGATTGTTTTCAATGTTAACTCTACAGGCAAAATTTTAAAAGAATCAGACAAGGAGACAGGCCATAAAAAAACAATAACTTCCCTTACGAAATCCTCTGATGGTTCACATTTTGTCACTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATACTAGAACGTTAACACTTATCAAGACATACGTGACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCATGTAGTACTTGGTGGTGGACAGGATGCTTCAGCAGTAACAACAACCGATCATCGTGCCGGAAAGTTTGAAGCTAAATTTTATGACAAGATTCTTCAAGAAGAGATTGGAGGTGTAAAAGGCCATTTTGGACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTGAGACTGCATCATTTTGACCCTGATTACTTCAACATCAAGATTTAA 1548 44.77 MLTFLSNSAILSSPVPMSTIITDITSGSDVSFACSLDESLQEALVLKVCSSKGFGFFWVDRGRLQSSVRLEDDRSLVLQFCNRIWRGSELRSSILRRDLKRILASFFSFAAGFEDDRNLVLHSASGFEDDQSLVLQFCNGRHRSFSGHHTNAFKLPNKRKMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHLKRIARDPFEQNGESVLVLKGPQGRINRAVWGSLNKTIISAGEDAIIRIWDSEIFYEVLMAREATGLYIASKRDGIVFNVNSTGKILKESDKETGHKKTITSLTKSSDGSHFVTGSLDKSARLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3562167 3569531 - Maker00027002 Lcy8g0147 639039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0147 515 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 161 515 IPR027525 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 503 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 Gene3D - 340 515 IPR015943 GO:0005515(InterPro)
Lcy8g0147 515 Pfam WD domain, G-beta repeat 377 408 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 Pfam WD domain, G-beta repeat 202 240 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 Pfam WD domain, G-beta repeat 297 334 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 Pfam WD domain, G-beta repeat 472 503 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 SUPERFAMILY WD40 repeat-like 160 503 IPR036322 GO:0005515(InterPro)
Lcy8g0147 515 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Lcy8g0147 515 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Lcy8g0147 515 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 334 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 161 512 - GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER)
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 245 - -
Lcy8g0147 515 SMART WD40_4 411 450 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 SMART WD40_4 158 198 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 SMART WD40_4 201 240 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 SMART WD40_4 366 408 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 SMART WD40_4 466 505 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 SMART WD40_4 295 334 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 Gene3D - 124 339 IPR015943 GO:0005515(InterPro)
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 417 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515(InterPro)
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 473 503 - -
Lcy8g0147 515 CDD WD40 167 503 - -
Lcy8g0147 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1126 Lcy-Chr12:21393178 Lcy8g0147 Lcy-Chr8:3562167 8.68E-13 dispersed
Lcy10g0603 Lcy-Chr10:16947614 Lcy8g0147 Lcy-Chr8:3562167 5.88E-92 transposed
Lcy10g0415 Lcy-Chr10:8866663 Lcy8g0147 Lcy-Chr8:3562167 9.82E-13 wgd
Lcy10g0538 Lcy-Chr10:13900282 Lcy8g0147 Lcy-Chr8:3562167 4.41E-11 wgd
Lcy7g1844 Lcy-Chr7:41498529 Lcy8g0147 Lcy-Chr8:3562167 5.02E-11 wgd
Lcy7g1394 Lcy-Chr7:21910016 Lcy8g0147 Lcy-Chr8:3562167 2.42E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0147 K03246 - csv:101211648 637.106