Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0168 ATGGACGGGCAGACCTCGATCTCCAATGGCACAGACGATACAATCGTCTGTTATGCGCCAACGATGATCACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCGCTTTGGTTTACCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCCGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCAGTACTGGGGAGGAATGCTAAATTTGCCAACACTGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCAAACGTAGGGCTTCTCTACTTTCTATTCTTGGTTGGTGTGGAGATGGATCTCTCAGTAATTCGTCGAACTGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGGTTCTTCCATTTGGAATAGGAGCTGCTTTTTCATTCCAGCTGCACAAGACTGGTGATCAAATCAATCACAGCACTTACATTATGTTTCTTGGTATTGCGCTCTCTGTGACTGCTTTCCCAGTGCTTGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCTATGGCTTCTGCTCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCCGAGAATGATTCCTCATCTTTGGCTTCTTTATGGGTTGTATTGTCAAGTGCAAGTTTTGTTTTGTTTTGCATCTTCATCATTAGACCGATGATCTCGTGGATGATTCGAAGAACCCCGGAAGGAGAAAGTATCAGTGAGTTCTACATTTGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCATAGGGACACACTCGGTTTTTGGAGCATTTGTGTTTGGGTTGGTTATCCCAAATGGATCACTTGGGGTGGCTTTGATTGAGAAACTTGAGGATTTTGTTTCAGGACTTTTGCTTCCTCTCTTCTTCGCAATAAGTGGGCTTAAGACTAATGTGGCTACCATAGACGGAATGCTATCTTGGGTATCTATTTTATTTATCACTTTCCTTGCTTTTATTGGAAAAATCCTTGGAACTCTCCTTGCCGCCATTTGTTATCAGATGTCCTATCGCGAAGGCGTCACATTAGGCTTTCTTATGAACACCAAAGGTCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTGGCCCTCGTTATGACAGGGATAATAACACCTGCAGTCACCATAATCTATAGGCCAACAAGAAGGTTTCTACCATATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACAATCATCAACCTCCTCGATGCATCCCACCCGACCAAAAGATCTCCCATTTGCATTTATGTTTTACACTTGGTCGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCTGGCCGTCCTGCCCTGAATAGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGTGTCTCTGTACAGCCTCTCACCGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCAGAGGACAAACGCGTTGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGAATGGTCAACCAAAATGTGCTAGCCAATGCCCCTTGCTCTGTTGGAATCCTAGTCGATCGAGGTCTAAATGGCTCAAATCGAACAGCATCCAACAAGGCATCTCACTATAACATAATCGTGCTGTTCTTCGGCGGACAAGACGACAGAGAAGCTCTATCATACGCATGGAGAATGTCAGAAAATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCCGCAAAAGAAGTACTAGAACCAAAACCCGAAGCAAATGGACAAGGAGCTTCACCAATGGAAATAGAAATCGACAGAGAGAGGCAACTCGACGAAGAATACATAAATGAATTTAGAGCAAAGAATGAAAACACGGAGTCAATTACTTACACAGAGAGAATCTTGAACAACGGTGAGGAGACAGTGGCGGCCATAAGATCGATGGACGATGCTCACGACCTGTTCATCGTGGGTAGAGGAGAAGCTCAGGTATCATCTCTCACCGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTCGGAGCAATCGGCGATCTGTTAGCTTCATCGGATTTTGCAGCGACGGCTTCAGTTTTGGTAGTGCAACAATTCGGAGCAGCAATGGCGGCTGAGCATGGAGGAGAAGAAGAAGAAAGTTCACCACGCAACCATGATCTAGGTGATCCCTACCAAAGCTTAAGATCCATGAACTTGAGGCAACATACTCCAACAAGAACTCAAATTATGTACAATCCACAACATATATAG 2526 44.42 MDGQTSISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVYLLKPFRQPRVISEILGGVILGPSVLGRNAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMVLPFGIGAAFSFQLHKTGDQINHSTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSASFVLFCIFIIRPMISWMIRRTPEGESISEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVATIDGMLSWVSILFITFLAFIGKILGTLLAAICYQMSYREGVTLGFLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPAVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRMVNQNVLANAPCSVGILVDRGLNGSNRTASNKASHYNIIVLFFGGQDDREALSYAWRMSENPGVSLTVMRFIAAKEVLEPKPEANGQGASPMEIEIDRERQLDEEYINEFRAKNENTESITYTERILNNGEETVAAIRSMDDAHDLFIVGRGEAQVSSLTAGLTDWSECPELGAIGDLLASSDFAATASVLVVQQFGAAMAAEHGGEEEESSPRNHDLGDPYQSLRSMNLRQHTPTRTQIMYNPQHI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3957644 3961040 + Maker00027026 Lcy8g0168 639060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0168 841 MobiDBLite consensus disorder prediction 796 841 - -
Lcy8g0168 841 Gene3D - 478 764 - -
Lcy8g0168 841 PANTHER CATION/H + ANTIPORTER 17 790 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy8g0168 841 Pfam Sodium/hydrogen exchanger family 53 431 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy8g0168 841 Gene3D - 41 439 IPR038770 -
Lcy8g0168 841 FunFam Cation/H(+) antiporter 15 41 441 - -
Lcy8g0168 841 MobiDBLite consensus disorder prediction 819 841 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0168 K26731 - - csv:101219265 1474.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0078 Lcy-Chr10:1062876 Lcy8g0168 Lcy-Chr8:3957644 4.91E-164 dispersed
Lcy10g0079 Lcy-Chr10:1072573 Lcy8g0168 Lcy-Chr8:3957644 8.15E-162 dispersed
Lcy11g0043 Lcy-Chr11:423047 Lcy8g0168 Lcy-Chr8:3957644 1.21E-168 dispersed
Lcy11g0048 Lcy-Chr11:469272 Lcy8g0168 Lcy-Chr8:3957644 8.91E-146 dispersed
Lcy1g2559 Lcy-Chr1:46821346 Lcy8g0168 Lcy-Chr8:3957644 2.37E-239 dispersed
Lcy6g0100 Lcy-Chr6:928511 Lcy8g0168 Lcy-Chr8:3957644 8.60E-30 dispersed
Lcy6g0101 Lcy-Chr6:934648 Lcy8g0168 Lcy-Chr8:3957644 9.48E-72 dispersed
Lcy6g0833 Lcy-Chr6:8378773 Lcy8g0168 Lcy-Chr8:3957644 9.32E-249 dispersed
Lcy6g0834 Lcy-Chr6:8396298 Lcy8g0168 Lcy-Chr8:3957644 8.94E-252 dispersed
Lcy8g0168 Lcy-Chr8:3957644 Lcy8g1706 Lcy-Chr8:43611130 3.57E-107 dispersed
Lcy12g1900 Lcy-Chr12:40267612 Lcy8g0168 Lcy-Chr8:3957644 7.61E-61 transposed
Lcy1g1455 Lcy-Chr1:14144593 Lcy8g0168 Lcy-Chr8:3957644 2.98E-224 transposed
Lcy3g1897 Lcy-Chr3:46223657 Lcy8g0168 Lcy-Chr8:3957644 7.51E-100 transposed
Lcy10g0444 Lcy-Chr10:10304632 Lcy8g0168 Lcy-Chr8:3957644 2.02E-52 wgd
Lcy7g1040 Lcy-Chr7:11091187 Lcy8g0168 Lcy-Chr8:3957644 6.83E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy3g1897 . 47 793 Antiporter Super Family AT3G52080 55.8 2.0e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39