Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0168 ATGGACGGGCAGACCTCGATCTCCAATGGCACAGACGATACAATCGTCTGTTATGCGCCAACGATGATCACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCGCTTTGGTTTACCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCCGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCAGTACTGGGGAGGAATGCTAAATTTGCCAACACTGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCAAACGTAGGGCTTCTCTACTTTCTATTCTTGGTTGGTGTGGAGATGGATCTCTCAGTAATTCGTCGAACTGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGGTTCTTCCATTTGGAATAGGAGCTGCTTTTTCATTCCAGCTGCACAAGACTGGTGATCAAATCAATCACAGCACTTACATTATGTTTCTTGGTATTGCGCTCTCTGTGACTGCTTTCCCAGTGCTTGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCTATGGCTTCTGCTCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCCGAGAATGATTCCTCATCTTTGGCTTCTTTATGGGTTGTATTGTCAAGTGCAAGTTTTGTTTTGTTTTGCATCTTCATCATTAGACCGATGATCTCGTGGATGATTCGAAGAACCCCGGAAGGAGAAAGTATCAGTGAGTTCTACATTTGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCATAGGGACACACTCGGTTTTTGGAGCATTTGTGTTTGGGTTGGTTATCCCAAATGGATCACTTGGGGTGGCTTTGATTGAGAAACTTGAGGATTTTGTTTCAGGACTTTTGCTTCCTCTCTTCTTCGCAATAAGTGGGCTTAAGACTAATGTGGCTACCATAGACGGAATGCTATCTTGGGTATCTATTTTATTTATCACTTTCCTTGCTTTTATTGGAAAAATCCTTGGAACTCTCCTTGCCGCCATTTGTTATCAGATGTCCTATCGCGAAGGCGTCACATTAGGCTTTCTTATGAACACCAAAGGTCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTGGCCCTCGTTATGACAGGGATAATAACACCTGCAGTCACCATAATCTATAGGCCAACAAGAAGGTTTCTACCATATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACAATCATCAACCTCCTCGATGCATCCCACCCGACCAAAAGATCTCCCATTTGCATTTATGTTTTACACTTGGTCGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCTGGCCGTCCTGCCCTGAATAGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGTGTCTCTGTACAGCCTCTCACCGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCAGAGGACAAACGCGTTGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGAATGGTCAACCAAAATGTGCTAGCCAATGCCCCTTGCTCTGTTGGAATCCTAGTCGATCGAGGTCTAAATGGCTCAAATCGAACAGCATCCAACAAGGCATCTCACTATAACATAATCGTGCTGTTCTTCGGCGGACAAGACGACAGAGAAGCTCTATCATACGCATGGAGAATGTCAGAAAATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCCGCAAAAGAAGTACTAGAACCAAAACCCGAAGCAAATGGACAAGGAGCTTCACCAATGGAAATAGAAATCGACAGAGAGAGGCAACTCGACGAAGAATACATAAATGAATTTAGAGCAAAGAATGAAAACACGGAGTCAATTACTTACACAGAGAGAATCTTGAACAACGGTGAGGAGACAGTGGCGGCCATAAGATCGATGGACGATGCTCACGACCTGTTCATCGTGGGTAGAGGAGAAGCTCAGGTATCATCTCTCACCGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTCGGAGCAATCGGCGATCTGTTAGCTTCATCGGATTTTGCAGCGACGGCTTCAGTTTTGGTAGTGCAACAATTCGGAGCAGCAATGGCGGCTGAGCATGGAGGAGAAGAAGAAGAAAGTTCACCACGCAACCATGATCTAGGTGATCCCTACCAAAGCTTAAGATCCATGAACTTGAGGCAACATACTCCAACAAGAACTCAAATTATGTACAATCCACAACATATATAG 2526 44.42 MDGQTSISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVYLLKPFRQPRVISEILGGVILGPSVLGRNAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMVLPFGIGAAFSFQLHKTGDQINHSTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSASFVLFCIFIIRPMISWMIRRTPEGESISEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVATIDGMLSWVSILFITFLAFIGKILGTLLAAICYQMSYREGVTLGFLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPAVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRMVNQNVLANAPCSVGILVDRGLNGSNRTASNKASHYNIIVLFFGGQDDREALSYAWRMSENPGVSLTVMRFIAAKEVLEPKPEANGQGASPMEIEIDRERQLDEEYINEFRAKNENTESITYTERILNNGEETVAAIRSMDDAHDLFIVGRGEAQVSSLTAGLTDWSECPELGAIGDLLASSDFAATASVLVVQQFGAAMAAEHGGEEEESSPRNHDLGDPYQSLRSMNLRQHTPTRTQIMYNPQHI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3957644 3961040 + Maker00027026 Lcy8g0168 639060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0168 841 MobiDBLite consensus disorder prediction 796 841 - -
Lcy8g0168 841 Gene3D - 478 764 - -
Lcy8g0168 841 PANTHER CATION/H + ANTIPORTER 17 790 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy8g0168 841 Pfam Sodium/hydrogen exchanger family 53 431 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy8g0168 841 Gene3D - 41 439 IPR038770 -
Lcy8g0168 841 FunFam Cation/H(+) antiporter 15 41 441 - -
Lcy8g0168 841 MobiDBLite consensus disorder prediction 819 841 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0078 Lcy-Chr10:1062876 Lcy8g0168 Lcy-Chr8:3957644 4.91E-164 dispersed
Lcy10g0079 Lcy-Chr10:1072573 Lcy8g0168 Lcy-Chr8:3957644 8.15E-162 dispersed
Lcy11g0043 Lcy-Chr11:423047 Lcy8g0168 Lcy-Chr8:3957644 1.21E-168 dispersed
Lcy11g0048 Lcy-Chr11:469272 Lcy8g0168 Lcy-Chr8:3957644 8.91E-146 dispersed
Lcy1g2559 Lcy-Chr1:46821346 Lcy8g0168 Lcy-Chr8:3957644 2.37E-239 dispersed
Lcy6g0100 Lcy-Chr6:928511 Lcy8g0168 Lcy-Chr8:3957644 8.60E-30 dispersed
Lcy6g0101 Lcy-Chr6:934648 Lcy8g0168 Lcy-Chr8:3957644 9.48E-72 dispersed
Lcy6g0833 Lcy-Chr6:8378773 Lcy8g0168 Lcy-Chr8:3957644 9.32E-249 dispersed
Lcy6g0834 Lcy-Chr6:8396298 Lcy8g0168 Lcy-Chr8:3957644 8.94E-252 dispersed
Lcy8g0168 Lcy-Chr8:3957644 Lcy8g1706 Lcy-Chr8:43611130 3.57E-107 dispersed
Lcy12g1900 Lcy-Chr12:40267612 Lcy8g0168 Lcy-Chr8:3957644 7.61E-61 transposed
Lcy1g1455 Lcy-Chr1:14144593 Lcy8g0168 Lcy-Chr8:3957644 2.98E-224 transposed
Lcy3g1897 Lcy-Chr3:46223657 Lcy8g0168 Lcy-Chr8:3957644 7.51E-100 transposed
Lcy10g0444 Lcy-Chr10:10304632 Lcy8g0168 Lcy-Chr8:3957644 2.02E-52 wgd
Lcy7g1040 Lcy-Chr7:11091187 Lcy8g0168 Lcy-Chr8:3957644 6.83E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0168 K26731 - csv:101219265 1474.53