Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0180 ATGACTGTTCCACTTGAAACTAAATCCAACAAACCCTCCATTATCTTCCCCCTCTCCACGCTACCAAGATCTGCTTATCTCTTCATTTCAATGGCTTCCCTTCTCTTCCTCTCTCTCCTCACTCTCTTCCTCACTTTGCATCTCTCCTCCGCCGCCGCCCACCACCACCCCTCCCCGGATTCATCTCTCCAAACCCTCCCACCGGAAATCGCCGCCGCCTGCAGGGCCACCCGCTTCCCGGACCAATGCAGATCCTCCATTTCCCAATCCAACCGCCTCCCGCAAAATCCCACGCCACTGCAGATAATCCAAGCCGCCGTCTGGGTCTCGTCGGAGAATCTCAAAACCGCCAAGTCCATGTTGAAGGCCATCCTCGACTCGTCGGCGGAGAGCCCCAACCTCAACCGCAGCGCCGCGGCCGTAAGTTGTCTGGAGGCTCTGGGTTACTCGGAGTACCGAATTGGCCTGGTTAACGACGCCGTTCCGCTTGGTCGGATTAAGGACGCGCGCGCGTGGCTTAGCGCGTCGCTGCTCTACCAGACCGGTTGCCGGTCGGGGCTCAAGTACGTGAACGACACGCGCGAGGTGGATCAAACGATGTCGTTTCTGGACTACTTGACCGTGCTGTCGAGCAACGCGCTGAGCATGGCGGTGGCGTACGATATCTTCGGGAACGATACGACGGAGTGGGGCCCGCCGAGAACAGAGCGAGATGGGTTCTGGGAGAAAAGCGGGTCGGATGGATCATCGGCCCGGTCGGGTTTTGTGTTTCCGTTAAGGACGGCGGCGGACGCGAGGGTGTGCAAGGACGGGAGCGAGGGGTGTTATGCGACGGTGCAGGCGGCGGTGGAGGCGGCGCCGGAGAATACGGCGGCGAGGTTTGTGATACATATAAAGGAAGGGGTTTACGAGGAGATAGTGAGAGTGTCACTGGAGAAGAAGAATTTGGTGTTTTTAGGAGATGGTATGGGCAAAACGGTAATTACAGGGTCGTTGAATGTGGGCCAGCCTGGAATTTCCACCTATAATTCGGCTACAGTCGGAGTTCTTGGCGACGGATTCATGGCTAGTGGCTTGAGCATTCAAAACACAGCAGGCCCTGATGCCCACCAAGCTGTGGCCTTTAGATCAGACAGCGATCTCTCCATCATTCATGAGTGTGAGTTTATAGGCAATCAAGACACTCTCTACGCCCACTCCCTCCGCCAATTCTACAACTCTTGTCGCATCCTAGGCAATGTGGACTTCATCTTTGGCAACTCAGCCTCCTTCTTCCAAGACTGCCAAATCCTAGTCCGTCCTCGCCAACTTAACCCCCAGGCTGGAGACGACAATGCCATCACGGCACACGGTAGGACCGACCCTGCGCAATCGACCGGGTTCGTGTTCCAGGATTGCCTGATAAATGGCACTGAGGAGTTCATGTCGTTGTACTATGCTAAGCCTCAAGCGCATAGGACCTTCTTGGGGCGACCGTGGAAGGAGTATTCGAGGACAGTTTTTATACGGTGTGATCTTGGAGCTCTTGTTTTTCCTTCTGGGTGGATGCCATGGAGTGGGGATATTGGTTTGAAGACTCTATATTATGGGGAGTTTGAGAATTTTGGGATCGGCTCGGAGTTGTCAAAGAGAGTTGAGTGGAGTAGTCAGATCCCTGCAAATTATGTTCTTAGTTACTCCGTTAAGAATTTCATTCAAGGAGACGAATGGATTCTATCATCTTAA 1725 54.2 MTVPLETKSNKPSIIFPLSTLPRSAYLFISMASLLFLSLLTLFLTLHLSSAAAHHHPSPDSSLQTLPPEIAAACRATRFPDQCRSSISQSNRLPQNPTPLQIIQAAVWVSSENLKTAKSMLKAILDSSAESPNLNRSAAAVSCLEALGYSEYRIGLVNDAVPLGRIKDARAWLSASLLYQTGCRSGLKYVNDTREVDQTMSFLDYLTVLSSNALSMAVAYDIFGNDTTEWGPPRTERDGFWEKSGSDGSSARSGFVFPLRTAADARVCKDGSEGCYATVQAAVEAAPENTAARFVIHIKEGVYEEIVRVSLEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFMASGLSIQNTAGPDAHQAVAFRSDSDLSIIHECEFIGNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASFFQDCQILVRPRQLNPQAGDDNAITAHGRTDPAQSTGFVFQDCLINGTEEFMSLYYAKPQAHRTFLGRPWKEYSRTVFIRCDLGALVFPSGWMPWSGDIGLKTLYYGEFENFGIGSELSKRVEWSSQIPANYVLSYSVKNFIQGDEWILSS 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4250777 4254073 + Maker00026997 Lcy8g0180 639072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0180 574 FunFam Pectinesterase 4 261 574 - -
Lcy8g0180 574 Gene3D - 259 574 IPR012334 -
Lcy8g0180 574 SUPERFAMILY Pectin lyase-like 261 571 IPR011050 -
Lcy8g0180 574 Pfam Pectinesterase 265 568 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy8g0180 574 Pfam Plant invertase/pectin methylesterase inhibitor 70 216 IPR006501 GO:0004857(InterPro)
Lcy8g0180 574 FunFam Probable pectinesterase/pectinesterase inhibitor 51 68 219 - -
Lcy8g0180 574 SMART PMEI_2 65 216 IPR006501 GO:0004857(InterPro)
Lcy8g0180 574 CDD PMEI-like_3 72 216 - -
Lcy8g0180 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 219 IPR035513 -
Lcy8g0180 574 PANTHER PECTINESTERASE 34 571 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy8g0180 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 216 IPR035513 -
Lcy8g0180 574 NCBIfam pectinesterase inhibitor domain 34 214 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0180 Lcy-Chr8:4250777 Lcy8g0358 Lcy-Chr8:10990330 5.43E-81 dispersed
Lcy8g0180 Lcy-Chr8:4250777 Lcy8g0182 Lcy-Chr8:4307615 3.07E-276 proximal
Lcy12g1385 Lcy-Chr12:31097205 Lcy8g0180 Lcy-Chr8:4250777 1.66E-91 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy8g0180 Lcy-Chr8:4250777 7.42E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0180 - - - 0.0