Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0182 ATGCCCACTCTCCCCAGAAAACCCATCTCCTCCTTCCTCTTCTCCAAATCCACCTTCCTCTTCCTCTCCATGGCCTCCCTCTCCTTCCTCTCTTTCCTCTCTCTCTTCTTCTTCCTCTCTCTCTCCTCCGCCTCCCACCACCCTCATTCCCCCATCACCGCCTCCGCCACCGCGGGTATCCTCCAGGCCTGCAAGGCCACCCGTTTTCCCGACCAATGCGGATCTTCCCTCTCTCACTCCTCCTCTCTCCCTCCCGATCCCACCCCTCTCCAGATCATCCACTCTGCCGTCGGGATCTCATCCGACGGTCTCACCACGGCGCAGGTCATGGTCAAGGACATTCTCGACTCCTCGGCCAACAATCTGAATCGGACCACTGCTGCCAAGAATTGCCTTGAGGTGCTGCGGAATTCCCAGTACCGAATTTCCCTGACGAATGAGGCTCTCCGGCGAGGCCGGACCAAGGACGCGCGCGCGTGGATGAGTGCGTCGCTGCTCTACCATTACGATTGCTGGTCGGCTCTCAAGTACGCCAACGACACCCAGTTGGTCGATAAAACCATGGCGTTTCTCGACTCTCTCATCGGCCTCTCCAGCAACGCGCTCAGCATGGTCGTCGCCTACGACATCTTCGGCAACGAGACCGCGTCCTGGACGCCGCCGAGGACCGAGCGCGATGGCTTCTGGGAGGGCGGCGCTGCTGCCGGATCTGGGTTGGGGTTCGGCGGTGGGTTCCCGTCGAAGCTGGCGGCGGATGCCACGGTCTGCAAGGACGGCCCCGGCGGATGCTACAGAACCGTTCAGGAAGCCGTGGACGCGGCGCCGGAAAATGCGGCGGCGCGTAGGTTTGTGATTCACATTAAGGAAGGTGTTTACGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTGGGAGATGGGAAGGGCAAAACGGTAATTACGGGGTCATTGAATGTGGGCCAGCCTGGACTTTCGACTTACAACACGGCTACCGTTGGAGTGGTTGGTGATGGATTCATGGCTAGTGGTCTTACTATTCAGAACACAGCAGGGCCTGATGCCCATCAAGCAGTGGCCTTCAGATCAGACAGTGATCTCTCTGTCATTCAAGATTGCGAGTTTATAGGCAACCAAGACACTCTCTACGCCCACGCCCTCAGACAGTTCTACAAATCCTGTCGGATTGAAGGCAATGTGGATTTCATCTTTGGAAACTCGGCTTCCATCTTCCAGGACTGTGAGATCCTAGTCCGTCCCCGACAACTCAAGCCCGAGAAGGGCGAGAACAACGCCGTCACAGCTCAGGGCAGGACCGACCCTGCTCAATCGACCGGTTTCGTGTTCCAGAACTGCCTGATAAATGGCACTGAGGAGTACATGTCGTTGTACAACAGCAAGCCTAAAGTGCACAAGAACTTCTTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTTCATACATTGTAATCTCGAGGCTCTTGTTTCGCCGCCCGGGTGGATGCCGTGGAGCGGGGATTTTGCTTTGAAAACTCTCTTCTATGGGGAGTTTGAGAATTCGGGGGCGGGGTCGAAGTCGTCCGAGCGCGTCGGCTGGAGTAGCCAGATTCCAGCACAGCATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTCAGTCCTCTGATGAACCCAAAATGTTGAACAGACAAACCAAAAATGTGAATTTAGATTAG 1749 55.52 MPTLPRKPISSFLFSKSTFLFLSMASLSFLSFLSLFFFLSLSSASHHPHSPITASATAGILQACKATRFPDQCGSSLSHSSSLPPDPTPLQIIHSAVGISSDGLTTAQVMVKDILDSSANNLNRTTAAKNCLEVLRNSQYRISLTNEALRRGRTKDARAWMSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMVVAYDIFGNETASWTPPRTERDGFWEGGAAAGSGLGFGGGFPSKLAADATVCKDGPGGCYRTVQEAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGKGKTVITGSLNVGQPGLSTYNTATVGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFIGNQDTLYAHALRQFYKSCRIEGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAVTAQGRTDPAQSTGFVFQNCLINGTEEYMSLYNSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVSPPGWMPWSGDFALKTLFYGEFENSGAGSKSSERVGWSSQIPAQHVFSYSVENFIQGDEWIPSSQSSDEPKMLNRQTKNVNLD 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4307615 4309748 + Maker00027118 Lcy8g0182 639074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0182 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 207 IPR035513 -
Lcy8g0182 582 FunFam Pectinesterase 246 570 - -
Lcy8g0182 582 SMART PMEI_2 55 204 IPR006501 GO:0004857(InterPro)
Lcy8g0182 582 Pfam Plant invertase/pectin methylesterase inhibitor 61 204 IPR006501 GO:0004857(InterPro)
Lcy8g0182 582 MobiDBLite consensus disorder prediction 560 582 - -
Lcy8g0182 582 Gene3D - 246 568 IPR012334 -
Lcy8g0182 582 CDD PMEI-like_3 63 205 - -
Lcy8g0182 582 PANTHER PECTINESTERASE 28 562 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy8g0182 582 FunFam Probable pectinesterase/pectinesterase inhibitor 51 58 207 - -
Lcy8g0182 582 NCBIfam pectinesterase inhibitor domain 32 204 IPR006501 GO:0004857(InterPro)
Lcy8g0182 582 SUPERFAMILY Pectin lyase-like 249 562 IPR011050 -
Lcy8g0182 582 Pfam Pectinesterase 252 557 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy8g0182 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 205 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0182 Lcy-Chr8:4307615 Lcy9g1690 Lcy-Chr9:42119248 2.67E-84 dispersed
Lcy8g0180 Lcy-Chr8:4250777 Lcy8g0182 Lcy-Chr8:4307615 3.07E-276 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0182 - - - 0.0