Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0203 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGCGATAATGGTACCGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCCCGACACACCGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCTGGTGATGGTGTCAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTTCGTCTGGACCTTGCTGGTCGTGATTTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTTGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGTAACATTGTTCTCAGTGGTGGTTCGACCATGTTCCCTGGTATTGCTGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATTAAGGTCGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGGTGAGACACTCCCTACATTCACTCTTAACCTCTCTTCTATGTGGATCTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAAGTTCAATATGTGCTTGAAT 1191 46.85 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVRHSLHSLLTSLLCGSRRASMTNLAHPSSTGSASKFNMCLN 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5066839 5068425 - Maker00027265 Lcy8g0203 639095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0203 397 PRINTS Actin signature 63 85 IPR004000 -
Lcy8g0203 397 PRINTS Actin signature 238 254 IPR004000 -
Lcy8g0203 397 PRINTS Actin signature 28 37 IPR004000 -
Lcy8g0203 397 PRINTS Actin signature 117 130 IPR004000 -
Lcy8g0203 397 PRINTS Actin signature 142 161 IPR004000 -
Lcy8g0203 397 PRINTS Actin signature 51 62 IPR004000 -
Lcy8g0203 397 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lcy8g0203 397 Pfam Actin 5 357 IPR004000 -
Lcy8g0203 397 SMART actin_3 7 376 IPR004000 -
Lcy8g0203 397 FunFam Actin, muscle 182 273 - -
Lcy8g0203 397 FunFam Actin, alpha skeletal muscle 36 73 - -
Lcy8g0203 397 FunFam Actin, alpha skeletal muscle 3 178 - -
Lcy8g0203 397 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lcy8g0203 397 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Lcy8g0203 397 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy8g0203 397 Gene3D - 10 360 - -
Lcy8g0203 397 FunFam Major actin 261 340 - -
Lcy8g0203 397 PANTHER ACTIN 8 354 IPR004000 -
Lcy8g0203 397 Gene3D Actin; Chain A, domain 4 182 273 - -
Lcy8g0203 397 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lcy8g0203 397 Gene3D - 140 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0099 Lcy-Chr7:917576 Lcy8g0203 Lcy-Chr8:5066839 5.38E-60 dispersed
Lcy7g0882 Lcy-Chr7:8799316 Lcy8g0203 Lcy-Chr8:5066839 6.21E-258 dispersed
Lcy8g0203 Lcy-Chr8:5066839 Lcy8g1811 Lcy-Chr8:44507180 2.67E-245 dispersed
Lcy10g2296 Lcy-Chr10:46584570 Lcy8g0203 Lcy-Chr8:5066839 6.47E-84 transposed
Lcy1g1128 Lcy-Chr1:10429941 Lcy8g0203 Lcy-Chr8:5066839 1.06E-267 transposed
Lcy4g0291 Lcy-Chr4:3562557 Lcy8g0203 Lcy-Chr8:5066839 2.42E-253 transposed
Lcy2g0448 Lcy-Chr2:3742011 Lcy8g0203 Lcy-Chr8:5066839 9.41E-61 transposed
Lcy11g0967 Lcy-Chr11:29317753 Lcy8g0203 Lcy-Chr8:5066839 5.51E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0203 K10355 - csv:101220617 711.835