Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0228 ATGGAAGACAAAAGAAAAGCTTTGTTGGCAGTGATTCTGATCCAAACCATTTACGCCGCCATGTTCTTACTCTCTAAGGCCGCATTTGACGGCGGAATGAACAACTTCATCTTTGTTTTCTATCGCCAGGCCACAGCCACCATCTTCCTTTCTCCCATAGCCTTCTTTCTCGAATGGAAAACTGCCCCACCCTTGACATTCCTCACCTTCTGCAAGATCTTTATGCTTTCTTTATTTGGAATAGCCATATGCTTAAATCTTTATGGGATTGCTCTTGTTTACACGTCAGCAACGTTGGCTGCAGCAACTACCAATTGTCTTCCTGTCATCACCTTCTTCGTCGCCCTCTTACTCAGGATGGAAGTGTTGAGGTTAAAGTCAATAGCAGGAATTGGAAAGCTAGCAGGAATAGTTTTGTGCCTTGGTGGTGTAGGGATGTTGGCATTTTACAAAGGCCCTCAACTGAAGTTGTTTAACAATCATCATCTCTTTTCTGCCCATAACACTCATGCCCACCATTCTTCTAATGTTGCTTCAACCAACTCTTGGTTGAAGGGCTGCTTTTTGATGCTTGCTTCCAATTCCTTATGGGGCATTTGGATTGTTCTTCAGGCATTCGTATTGAAAAGCTATCCATCGAAGCTTCTGTTAACAAACCTTCAGTGTTTGTTAAGTTCATTTCAATCCTTTGCTATTGCTATTGCAATGGAGAGAGACCCTCAGCAATGGAAACTTGGCTGGAATGTTAGGCTTCTCGCAGTCGCATACTGTGGCGTGGTGGTGACGGCTGTGACATATTACCTTCAAGCATGGGTGATCGAAAAGAAAGGGCCAGTTTATCTAGCCATGTCCACGCCGCTCTCTCTTATCATTACAATTTTCCTTTCTGCTATCTTTCTCGGAGACCCTGTCACTCTTGGAAGTACTTTGGGGGGAGTTTTATTGGTTGGAGGGCTGTATTTTGTGCTGTGGGGAAAGAGCAAAGAGCAAAAGATAAGTGAAGGATTGAAAGAAGGTGGCACAGAATGCAACATGCAACAGAAGGAGACCACAAAATTAGGAAATGAAGATCCAGTGGAAAATGTCTGA 1089 43.71 MEDKRKALLAVILIQTIYAAMFLLSKAAFDGGMNNFIFVFYRQATATIFLSPIAFFLEWKTAPPLTFLTFCKIFMLSLFGIAICLNLYGIALVYTSATLAAATTNCLPVITFFVALLLRMEVLRLKSIAGIGKLAGIVLCLGGVGMLAFYKGPQLKLFNNHHLFSAHNTHAHHSSNVASTNSWLKGCFLMLASNSLWGIWIVLQAFVLKSYPSKLLLTNLQCLLSSFQSFAIAIAMERDPQQWKLGWNVRLLAVAYCGVVVTAVTYYLQAWVIEKKGPVYLAMSTPLSLIITIFLSAIFLGDPVTLGSTLGGVLLVGGLYFVLWGKSKEQKISEGLKEGGTECNMQQKETTKLGNEDPVENV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5928072 5935613 - Maker00027061 Lcy8g0228 639120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0228 362 MobiDBLite consensus disorder prediction 339 362 - -
Lcy8g0228 362 Pfam EamA-like transporter family 6 133 IPR000620 GO:0016020(InterPro)
Lcy8g0228 362 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020(InterPro)
Lcy8g0228 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 328 - -
Lcy8g0228 362 PANTHER WAT1-RELATED PROTEIN 10 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy8g0228 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1352 Lcy-Chr10:36671494 Lcy8g0228 Lcy-Chr8:5928072 1.80E-53 dispersed
Lcy4g1697 Lcy-Chr4:42797817 Lcy8g0228 Lcy-Chr8:5928072 2.95E-65 dispersed
Lcy6g0031 Lcy-Chr6:334775 Lcy8g0228 Lcy-Chr8:5928072 2.37E-56 dispersed
Lcy8g0222 Lcy-Chr8:5778149 Lcy8g0228 Lcy-Chr8:5928072 5.39E-29 dispersed
Lcy8g0228 Lcy-Chr8:5928072 Lcy9g1576 Lcy-Chr9:40945254 2.23E-66 dispersed
Lcy8g0224 Lcy-Chr8:5825163 Lcy8g0228 Lcy-Chr8:5928072 2.94E-32 proximal
Lcy8g0225 Lcy-Chr8:5834202 Lcy8g0228 Lcy-Chr8:5928072 4.07E-64 proximal
Lcy8g0226 Lcy-Chr8:5841437 Lcy8g0228 Lcy-Chr8:5928072 1.90E-48 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0228 - - - 0.0