Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0232 ATGGCGAAATCACCGGAAAATGAACATCCAAACAAGGCTTTTGGTTGGGCTGCCCGAGATTCTTCTGGCTTACTCTCTCCCTTTCATTTCTCTCGAAGGTCAATCCCTCTCTGCCCTTTCTTGAAATCTTCCCTTCAAAGTGGACGTAGGCCGGAGTTGCCGAACCACTATACATCTGCTGTCATCTTCTTCCTTTTCCCTCTGTGTGTTTGCTTGCTTGATCGAATCTGTGAAGAACCTCATTTGCCTTCTTCGCTAAAGAAATCTTCCCTTCAAAGTGGACGTAGGCCGGAGTTGCCGAACACTATACATCTGCTGTCATCTTCTTCCTTTTCCCTCTGTGTGTTTGCTTGCTTGATCGAATCTGTGAAGAACCTCATTTGTCTTCTTCGTGATGATGACGTAAGCGAAAAGACATATATCCTTATTTTGAAAAGAGAAAATCGTGATGATGATGTCAGTATCAAAATCCTTTACTGTGGGGTTTGCCATTCTGATCTGCATATGCTCAAGAATGATTGGGGTGCCACAAATTATCCTATAGTCCCAGGGCATGAGATTGCTGGAGTTGTGACTTCTGTTGGGAAGAACGTGACGAAATTCAAAGCGGGGGACGAAGTCGGGGTCGGTGTCATAGTTGGATCTTGTAGAAATTGTGAAAATTGTGAACAAGACTTGGAGAGTTACTGTCCCAAGATGATATATACTTACAATTTTCCCGGAGTCGATGGATCGAATAATTACGGTGGTTACTCCGATACGATCGTCGTCGATCAACATTTTGTTGTGAGATTTCCTAACAACTTACCTCTACATGCTGGGGCTCCCCTTCTTTGTGCTGGAATTACAGTTTATAGCCCAATGAAATATTTTGGAATGACTAAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGTGGCCTTGGCCATGTTGCAGTTAAGCTTGCCAAGGCATTTGGCTTGAAAGTTACTGTCATCAGTACCTCTCTCAGGAAGAAGGAGGAAGCAATCGACCGGCTCGGTGCCGATGCTTTCATTGTTTGGAGTGATCCCACAGAAATGAAGGCTGCCATGGGAACTTTGGATTACATTGTGGACACAATTTCCGCTGTTCATTCCCTTGATTCATTGATTAGTCTGCTAAAGTTCAATGGAAAACTGATCGCGGTCGGTTTACCTAACAAGCCAGTAGACGTATCGCTCGGGATTCTAGTTTCTGGTAGGAAGCTGATTGCTGGAAGCAACTTTGGAGGACCAAAAGAGACACAGGAGATGTTGGATTTCTGTGGAAAGCACAACATTACAGCAGATATTGAGCTCATTAAGATGGATGACATTAACTCAGGCCATCGAAAGGCTTGCGAAAGCTGA 1371 44.42 MAKSPENEHPNKAFGWAARDSSGLLSPFHFSRRSIPLCPFLKSSLQSGRRPELPNHYTSAVIFFLFPLCVCLLDRICEEPHLPSSLKKSSLQSGRRPELPNTIHLLSSSSFSLCVFACLIESVKNLICLLRDDDVSEKTYILILKRENRDDDVSIKILYCGVCHSDLHMLKNDWGATNYPIVPGHEIAGVVTSVGKNVTKFKAGDEVGVGVIVGSCRNCENCEQDLESYCPKMIYTYNFPGVDGSNNYGGYSDTIVVDQHFVVRFPNNLPLHAGAPLLCAGITVYSPMKYFGMTKPGKHLGVAGLGGLGHVAVKLAKAFGLKVTVISTSLRKKEEAIDRLGADAFIVWSDPTEMKAAMGTLDYIVDTISAVHSLDSLISLLKFNGKLIAVGLPNKPVDVSLGILVSGRKLIAGSNFGGPKETQEMLDFCGKHNITADIELIKMDDINSGHRKACES 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6158046 6167536 - Maker00027180 Lcy8g0232 639124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0232 456 SMART PKS_ER_names_mod 133 451 IPR020843 GO:0016491(InterPro)
Lcy8g0232 456 CDD CAD1 146 447 IPR047109 GO:0016616(InterPro)
Lcy8g0232 456 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 269 434 IPR036291 -
Lcy8g0232 456 SUPERFAMILY GroES-like 147 298 IPR011032 -
Lcy8g0232 456 Gene3D - 280 436 - -
Lcy8g0232 456 PANTHER ALDEHYDE REDUCTASE 145 449 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Lcy8g0232 456 FunFam Cinnamyl alcohol dehydrogenase 280 436 - -
Lcy8g0232 456 Pfam Alcohol dehydrogenase GroES-like domain 150 266 IPR013154 -
Lcy8g0232 456 Gene3D - 144 451 - -
Lcy8g0232 456 Pfam Zinc-binding dehydrogenase 307 429 IPR013149 -
Lcy8g0232 456 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 184 198 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2821 Lcy-Chr1:56351541 Lcy8g0232 Lcy-Chr8:6158046 1.16E-17 dispersed
Lcy8g0232 Lcy-Chr8:6158046 Lcy9g2283 Lcy-Chr9:47268657 3.07E-112 dispersed
Lcy8g0232 Lcy-Chr8:6158046 Lcy8g0233 Lcy-Chr8:6209097 6.22E-183 tandem
Lcy12g1474 Lcy-Chr12:33560678 Lcy8g0232 Lcy-Chr8:6158046 1.65E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0232 K00083 - csv:101205228 520.776