Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0233 ATGGCGAAATCACCAGAAGATGAACATCCAAACAAGGCTTTTGGTTGGGCTGCCCGAGATACTTCCGGCTTACTCTCTCCCTTTCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTCAGCATCAAAGTCCTTTACTGTGGGGTTTGCCATTCTGATCTGCACTTGCTCAAGAATGATTGGGGTGTCACAAGTTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTAGTAACTTCTGTTGGGAATAATGTGAAGAAATTCAAAGCGGGCGACCAAGTTGGGGTTGGTGTCATAGTTGGATCTTGCAAAAGTTGTGAAAGTTGTGAACAGGACTTGGAGAATTACTGCCCCAAGATGATATTTACTTACAACTCACATTCATATGATGGAGCAAAGACTTACGGTGGTTATTCCGATAAGATCGTCGTCGATCAGCATTTCGTGCTTCGATTTCCTGACAACTTACCCCTTGATGCTGGAGCTCCACTTCTATGCGCTGGAATCACAATTTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGCAAGGCATTTGGCTTGAAAGTTACTGTCATCAGTACCTCTCCAAGAAAGAAGGAGGAAGCTATCGATAGGCTCGGTGCAGACGCATTCCTTGTTTCGAGTGATCCTGCACAATTGAAGCTATATGTCATGCTTGATTCTGAGCAGGCTTCCATGGGGACAATGGATTACATCATCGACACAGTATCAGCTATCCATGCTCTTGCTCCACTGCTTGGTCTGCTAAAACTCAATGGAAAGTTGGTCACTGTGGGTTTACCTAACAAGCCACTCGATCTGCCAATTGCTTCTCTAGTTATCGGTAGGAAGATGGTTGGTGGAAGCAACTTTGGAGGGCTGAAAGAGACACAAGAAATGTTGGATTTCTGTGCTAAACACAACATCACAGCAGAGATTGAGCTCATTCAGATGGACGACATTAACACGGCCATCGAAAGGCTTGCGAAAGCGGATGTTCGATATCGGTTTGTGATCGACATTGGAAACTCCTTGAAATAG 1104 44.66 MAKSPEDEHPNKAFGWAARDTSGLLSPFHFSRRENGDDDVSIKVLYCGVCHSDLHLLKNDWGVTSYPIVPGHEIVGVVTSVGNNVKKFKAGDQVGVGVIVGSCKSCESCEQDLENYCPKMIFTYNSHSYDGAKTYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFLVSSDPAQLKLYVMLDSEQASMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLDLPIASLVIGRKMVGGSNFGGLKETQEMLDFCAKHNITAEIELIQMDDINTAIERLAKADVRYRFVIDIGNSLK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6209097 6211915 + Maker00027228 Lcy8g0233 639125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0233 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Lcy8g0233 367 PANTHER ALDEHYDE REDUCTASE 5 365 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Lcy8g0233 367 FunFam probable cinnamyl alcohol dehydrogenase 16 176 - -
Lcy8g0233 367 Gene3D - 167 332 - -
Lcy8g0233 367 FunFam Cinnamyl alcohol dehydrogenase 167 332 - -
Lcy8g0233 367 Gene3D - 16 362 - -
Lcy8g0233 367 CDD CAD1 14 361 IPR047109 GO:0016616(InterPro)
Lcy8g0233 367 SMART PKS_ER_names_mod 23 360 IPR020843 GO:0016491(InterPro)
Lcy8g0233 367 Pfam Alcohol dehydrogenase GroES-like domain 36 154 IPR013154 -
Lcy8g0233 367 Pfam Zinc-binding dehydrogenase 194 326 IPR013149 -
Lcy8g0233 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 330 IPR036291 -
Lcy8g0233 367 SUPERFAMILY GroES-like 22 185 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1474 Lcy-Chr12:33560678 Lcy8g0233 Lcy-Chr8:6209097 1.95E-120 dispersed
Lcy1g0846 Lcy-Chr1:7236350 Lcy8g0233 Lcy-Chr8:6209097 1.21E-181 dispersed
Lcy1g0847 Lcy-Chr1:7242689 Lcy8g0233 Lcy-Chr8:6209097 2.32E-179 dispersed
Lcy4g0213 Lcy-Chr4:2669396 Lcy8g0233 Lcy-Chr8:6209097 4.90E-127 dispersed
Lcy6g0498 Lcy-Chr6:4673450 Lcy8g0233 Lcy-Chr8:6209097 2.94E-124 dispersed
Lcy8g0232 Lcy-Chr8:6158046 Lcy8g0233 Lcy-Chr8:6209097 6.22E-183 tandem
Lcy9g2283 Lcy-Chr9:47268657 Lcy8g0233 Lcy-Chr8:6209097 4.30E-140 transposed
Lcy6g1415 Lcy-Chr6:21068207 Lcy8g0233 Lcy-Chr8:6209097 1.60E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0233 K00083 - csv:101205228 587.8