Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g0278 | ATGGAGCTGGGTTTCGTTACATCGAAAGACAACACCTGGTGGGTCTTTACACTCCCTTATCTTCTTGGTTCGGAAAACCTTGATTGTTGTCTCATTCTTCTGTTGGCTTTTCTTTCTCTTGCCCTTCTTTCTTGGGCTTTTGCCGTCGGTGGCACTGCTTGGAGAAATGGAAGGAATGAAAGAGGTCGAGTTCCCATTCCCGGCCCTCGCGCCCTTCCAATTCTCGGCAGTTTGTTCACTCTCAGTCGTGGCTTACCCCACCGGACTCTCGCTGCCATGGCAGCTGCCCGAGGTAACTCTAAGCTAATGGCCTTCAGTCTCGGCTCCACCCCTGTTGTCGTGGCTTCCGACCCAAATACGGCCAAGGAAATTTTAACCTCGCCCCACTTCGCCGACCGCCCTTTAAAGCAGTCCGCCAAAAGCCTAATGTTCGGTCGAGCCATAGGGTTCGCACCAAACGGCACCTACTGGCGCCTCCTCAGAAGAATCGCCTCTTCACACCTCTTCTCTCCAAGGCGTATTGCAGCCCACGAAGGCGCTCGCCAGCTCGAATGCGCCGCTATGCTGCAAAGCATTCACAACGACCAAACCCTCCACGGAACCGTTTCTCTGAAGAAGCACCTTCAAGCAGCCGCCTTGAACAACATCATGTGGAGTGTCTTCGGGAAGCGCTTCGACCCGGCCGACTCGAAGTTAGAAGCGCTTCGGGATTTGGTCCGAGAAGGGTTCGAGCTGTTGGGTGCCTTCAACTGGTCCGATCATCTCCCATGGCTTAGTTGGTTCTACGACCCGTGTCGTATTAACCAGCGCTGCGCCAAACTCGTCCCCAAAGTTACCAAATTCGTCGGAGACGTAATTAATGAGCACCGTCGGCCTAAAACCCTGTCGGATGATTCCGATTTTGTTGACGTTTTGCTCTCTCTCGATGGCGACGAAAAGCTCAACGATGATGACATGGTCGCTGTTTTATGGGAAATGATATTCAGAGGGACGGATACGACAGCGCTGCTTACAGAGTGGGTGATGGCGGAGTTAGTTTTGCACCGTGAGGTACAGGAAGAACTTGGGAGGGAAATCGAGAGGGCTGTGGGCGGTGACGGAAGAACCCTCACAGACGCCGACGTGGCTAACCTGCCTTACTTACAGGCGGTGGTGAAGGAGACACTGCGGCTGCACCCACCGGGTCCACTTCTCTCGTGGGCCCGCCTCTCTTCGTCGGACGTCCAGCTCAGCAACGGCATGCTTATCCCTGAGAACACAACCGCCATGGTCAATATGTGGGCCATCACACACGATCCGCACGTATGGGAGGATCCACACGTGTTCAACCCGGGGAGGTTCGTGGGCGCCGACGTGGACGTCAGGGGCAGCGACCTCCGCCTGGCGCCCTTTGGGGCTGGACGGAGGGTCTGCCCGGGAAAGAACCTCGGCCTTGTCACTGTCACGCTTTGGGTCGCTAAGCTGGTCCATCACTTCAAATGGGCCCCCGACCCGGCCCACCCTGTGGACCTCACCGAACTCCTCAAGCTCTCCTGCGAGATGAAGAATCCTCTACGTGCAGTCGCAGTGCAAAGACGTGGACTTTAG | 1587 | 55.95 | MELGFVTSKDNTWWVFTLPYLLGSENLDCCLILLLAFLSLALLSWAFAVGGTAWRNGRNERGRVPIPGPRALPILGSLFTLSRGLPHRTLAAMAAARGNSKLMAFSLGSTPVVVASDPNTAKEILTSPHFADRPLKQSAKSLMFGRAIGFAPNGTYWRLLRRIASSHLFSPRRIAAHEGARQLECAAMLQSIHNDQTLHGTVSLKKHLQAAALNNIMWSVFGKRFDPADSKLEALRDLVREGFELLGAFNWSDHLPWLSWFYDPCRINQRCAKLVPKVTKFVGDVINEHRRPKTLSDDSDFVDVLLSLDGDEKLNDDDMVAVLWEMIFRGTDTTALLTEWVMAELVLHREVQEELGREIERAVGGDGRTLTDADVANLPYLQAVVKETLRLHPPGPLLSWARLSSSDVQLSNGMLIPENTTAMVNMWAITHDPHVWEDPHVFNPGRFVGADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKWAPDPAHPVDLTELLKLSCEMKNPLRAVAVQRRGL | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 8225270 | 8227292 | + | Maker00026982 | Lcy8g0278 | 639170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g0278 | 528 | Pfam | Cytochrome P450 | 67 | 502 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PANTHER | CYTOCHROME P450 78A7-RELATED | 6 | 521 | IPR051996 | - | |
| Lcy8g0278 | 528 | SUPERFAMILY | Cytochrome P450 | 66 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | Gene3D | Cytochrome P450 | 53 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | FunFam | Cytochrome P450 78A5 | 58 | 525 | - | - | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 211 | 229 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 96 | 115 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 425 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 382 | 400 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | PRINTS | P450 superfamily signature | 383 | 394 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0278 | 528 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy8g0278 | 528 | CDD | CYP78 | 98 | 518 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy7g0047 | Lcy-Chr7:363829 | Lcy8g0278 | Lcy-Chr8:8225270 | 1.51E-158 | dispersed | |
| Lcy8g0278 | Lcy-Chr8:8225270 | Lcy1g0748 | Lcy-Chr1:6421440 | 5.70E-75 | dispersed | |
| Lcy8g0975 | Lcy-Chr8:34377657 | Lcy8g0278 | Lcy-Chr8:8225270 | 6.34E-48 | dispersed | |
| Lcy1g1999 | Lcy-Chr1:25181923 | Lcy8g0278 | Lcy-Chr8:8225270 | 9.62E-67 | wgd | |
| Lcy6g1734 | Lcy-Chr6:34142993 | Lcy8g0278 | Lcy-Chr8:8225270 | 4.19E-67 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g0278 | K20619 | - | csv:101214099 | 850.892 |