Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0308 ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGCTTTGTTTGAAGATCAAGCGCCCTCATCAGAAGCAGCAGCTCATTCTCAAATGGGATTCTTCTCTTTCCCTTCTTCAAACTTAACCTTTTTTCAACTTCCTTCAATGCCCCAAACCCATTCTTCTTCTTCTTCCCCTCCATTTGAGCCTCCCAATTTCTCCACTACTTCCAATATCAATATTAATAATAATACCCTCTCTGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCTTCACTTCTCTCCCCTTCCTCTCACTTTGCACCTCAACACCTCCTCTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGGTTGGAGAGAGATTGATGAGTGGGAAGAGAAATGAGTATCAATTGGGAGTGTCAACAATGAAGATGAAGAAGATGAAGGGAAGAAGAAAGGTGAGAGAGCCAAGGTTCTCCTTCAAGACCATGAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGAAAGTACGGACAGAAAGTGGTCAAAAACACACAGCATCCTAGAAGCTACTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACACATTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAACAATTTCTTTTGGTACCCTCTCTCTCTCTCTCTCTAA 759 42.69 MGSKSQVLLNPQALFEDQAPSSEAAAHSQMGFFSFPSSNLTFFQLPSMPQTHSSSSSPPFEPPNFSTTSNININNNTLSETLLSSSLLPLKPSLLSPSSHFAPQHLLSLQTSTPNLWPWGEVGERLMSGKRNEYQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDSEDSEAQTHLNNFFWYPLSLSL 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9337545 9339278 - Maker00027099 Lcy8g0308 639200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0308 252 Pfam WRKY DNA -binding domain 169 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0308 252 Gene3D WRKY domain 155 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0308 252 FunFam WRKY transcription factor 57 154 228 - -
Lcy8g0308 252 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 134 231 IPR044810 GO:0003700(InterPro)
Lcy8g0308 252 ProSiteProfiles WRKY domain profile. 163 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0308 252 SUPERFAMILY WRKY DNA-binding domain 160 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0308 252 SMART WRKY_cls 168 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0775 Lcy-Chr4:9260395 Lcy8g0308 Lcy-Chr8:9337545 8.72E-29 dispersed
Lcy7g1092 Lcy-Chr7:11745699 Lcy8g0308 Lcy-Chr8:9337545 3.47E-13 dispersed
Lcy8g0308 Lcy-Chr8:9337545 Lcy8g1705 Lcy-Chr8:43605441 1.60E-22 dispersed
Lcy11g2138 Lcy-Chr11:44925625 Lcy8g0308 Lcy-Chr8:9337545 1.81E-46 transposed
Lcy1g1097 Lcy-Chr1:9997992 Lcy8g0308 Lcy-Chr8:9337545 1.62E-65 transposed
Lcy12g0862 Lcy-Chr12:11979788 Lcy8g0308 Lcy-Chr8:9337545 2.23E-32 wgd
Lcy6g1902 Lcy-Chr6:39836153 Lcy8g0308 Lcy-Chr8:9337545 3.32E-26 wgd
Lcy8g0308 Lcy-Chr8:9337545 Lcy8g0779 Lcy-Chr8:28527740 1.56E-40 wgd
Lcy8g0308 Lcy-Chr8:9337545 Lcy8g0340 Lcy-Chr8:10382139 1.08E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20467 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0308 - - - 0.0