Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0358 ATGGCTTCTTCAAACTCCATTCTTCCTCTCACAATCCTCACCCTCCTCTTCCTATTCTCCTCCTCATCCTCTGCCCTTCCCGTCCCCGCTCCCGTCCCGACAGAGGAGATTTGCCGATCCACAACCTCGCCATTCTTCTGCAAATCCTTCCTCCCCAACTCCCCGGCCACCGTCCACTCCCATTGCCGATACACTCTCCGCCACGCCCTCGCCCACGCACGCACCTTCCTCGCCCTCGTCGACACCCACATCACTCTCTTCCCCTACCTCTCTGCACTCTACGACTGCCTGTCCCTCGCGGCGGCCAACCTCGACTTTATATCCAACAGTTTCCACACAGTCAACACGACCAGCCAGGCCCTTCCGTTCTACCAAGCCGATGAGATGCTGAGCTTGCTGAGCGCTGTGATCACGAATGAAGACACTTGTTACGAAGGGCTGGTGGGCTTGGGCGTGGGCTTGGACTTGGTTGATAAGGTGTTGAAGGCCATCTCGTTCGATAGAAAGCTTTACAGTTTGTACCTTTCTTTGTTCAAATTAGGTTGGGTTTCTGATGACGTCAAGGCTCCTGAGTTGCCAAAGACGAACCGTTTTGGGCTCGGGAATGGGGCCTTGAAGCTCAAGATGTCGCCCAAAGACCGTGCGTATTATGAGCGGTTGGTGCATAGGAAAAAGCCGGCGGCTAGAAGGCTTCTTCAAACCAATAATTATGAAAATGATGGAATTTTGATCAATGGTATTGTTGCGGTGGATCAAAATGGAACGTACGATTTCAGCACAATCAGCGCGGCCATTGCGGCAGCTCCGAACAACTCGGCCGCCGCGAACGGATACTATCTGATCTTCGTGACTGCCGGGATCTACAACGAGACCGTGTTGGTTCCCAAAAACAAAAAGTACGTTTTGATGATTGGAGAAGGTAACAATCAGACCATCATCACCGGCAACAAGAACGTCGTCGACGGCTCCACCACTTTCAACAGTGCAACCCTCGCTGTGGAGGGAACAGGATTCTTCGGGGTGAACCTCACGATCACCAACACCGCGGGCGCCGCCAAACACCAAGCCGTGGCGCTACGAGTGAGCGCTGACATGACGACGTTCTACACTTGCATATTCGAAGGCTACCAAGACACTCTATACACCCACTCCCTCCGCCAATTCTACAGAGAGTGCGACATCACCGGAACCGTCGACTTCATCTTCGGTAATGCTGCGGTCGTCTTCCAAACCTGCAACATCTACGTGCGACTGCCGCTGAGCGGCCAGTTCAACGCCCTCACGGCGCAAGGCCGGACCGACCCAAACCAAAACACCGGCACCTCCATCCACAACTGCACCCTCAAGCCCACAGCCGAGCTCGCAGCTAGCTCGACCACCAAGAGCTACTTGGGGCGGCCGTGGAAGCAATATTCTCGAACGGTTTACATGCAGTCGTTTATCGACGCGTTTATTGACCCTGCAGGGTGGAAGGAATGGGACGGGACTTTGAATTTGAACACGTCGTATTATGCGGAGTTTAATAACTCAGGGCCGGGATCCGACACTTCGCACCGGGTTCAATGGGCGGTGGGTGAGATCAACGCCACCGTGGCTAACAACTTCACGGTGTCGAACTTCTTGGCTGGAGATCAATGGTTGCCGCCGACCACCGTGCAGTACACTGGCGGTTTGATATCGTAA 1683 54.25 MASSNSILPLTILTLLFLFSSSSSALPVPAPVPTEEICRSTTSPFFCKSFLPNSPATVHSHCRYTLRHALAHARTFLALVDTHITLFPYLSALYDCLSLAAANLDFISNSFHTVNTTSQALPFYQADEMLSLLSAVITNEDTCYEGLVGLGVGLDLVDKVLKAISFDRKLYSLYLSLFKLGWVSDDVKAPELPKTNRFGLGNGALKLKMSPKDRAYYERLVHRKKPAARRLLQTNNYENDGILINGIVAVDQNGTYDFSTISAAIAAAPNNSAAANGYYLIFVTAGIYNETVLVPKNKKYVLMIGEGNNQTIITGNKNVVDGSTTFNSATLAVEGTGFFGVNLTITNTAGAAKHQAVALRVSADMTTFYTCIFEGYQDTLYTHSLRQFYRECDITGTVDFIFGNAAVVFQTCNIYVRLPLSGQFNALTAQGRTDPNQNTGTSIHNCTLKPTAELAASSTTKSYLGRPWKQYSRTVYMQSFIDAFIDPAGWKEWDGTLNLNTSYYAEFNNSGPGSDTSHRVQWAVGEINATVANNFTVSNFLAGDQWLPPTTVQYTGGLIS 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10990330 10994133 + Maker00011352 Lcy8g0358 639250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0358 560 Pfam Pectinesterase 248 544 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy8g0358 560 FunFam Pectinesterase 243 558 - -
Lcy8g0358 560 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Lcy8g0358 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 180 IPR035513 -
Lcy8g0358 560 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Lcy8g0358 560 PANTHER PECTINESTERASE 16 549 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy8g0358 560 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857(InterPro)
Lcy8g0358 560 SMART PMEI_2 29 177 IPR006501 GO:0004857(InterPro)
Lcy8g0358 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 180 IPR035513 -
Lcy8g0358 560 Gene3D - 244 558 IPR012334 -
Lcy8g0358 560 CDD PMEI-like_3 37 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0180 Lcy-Chr8:4250777 Lcy8g0358 Lcy-Chr8:10990330 5.43E-81 dispersed
Lcy8g0358 Lcy-Chr8:10990330 Lcy13g1039 Lcy-Chr13:22711472 1.87E-35 dispersed
Lcy9g1690 Lcy-Chr9:42119248 Lcy8g0358 Lcy-Chr8:10990330 1.11E-189 transposed
Lcy12g1385 Lcy-Chr12:31097205 Lcy8g0358 Lcy-Chr8:10990330 9.61E-112 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy8g0358 Lcy-Chr8:10990330 2.47E-91 wgd
Lcy6g1408 Lcy-Chr6:20932881 Lcy8g0358 Lcy-Chr8:10990330 2.26E-36 wgd
Lcy6g1632 Lcy-Chr6:29758567 Lcy8g0358 Lcy-Chr8:10990330 8.27E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0358 K01051 - csv:101216984 833.558